Beteiligung am Exzellenzcluster

CiM Principal Investigator
Mitglied der CiM-IMPRS Graduiertenschule

  • Forschungsgebiet A.1: Zelluläre Polarisation und Veränderungen der Zellstruktur
  • Forschungsgebiet A.6: Analyse von Bewegung in Zellsysytemen
  • Forschungsgebiet C.5: Ganzkörper-Bildgebung nicht-narkotisierter Organismen
  • Projekt FF-2016-06: FIM4D: Automated FIM-based in-vial activity monitoring and tracking for locomotion analysis of Drosophila larvae (Xiaoyi Jiang, Christian Klämbt, Projektlaufzeit: 07/2016 - 06/2018)
  • Projekt FF-2013-03: Identifizierung neuer Aktin-Regulatoren der Zellform, Zellmigration und Zellpolarität in Drosophila-Blutzellen (Sven Bogdan, Xiaoyi Jiang; Projektlaufzeit: 07/2013 - 06/2015)
  • Projekt FF-2013-16: PET imaging of freely moving mice (Xiaoyi Jiang, Frank Wübbeling, Klaus Schäfers; Projektlaufzeit: 07/2013 - 06/2016)
© CiM - Peter Grewer

„Wir füllen biomedizinische Bilder mit Sinn“

Prof. Xiaoyi Jiang entwickelt Verfahren für die Erstellung und Analyse biomedizinischer Bilder. Damit lässt sich die Bewegung einzelner Zellen oder auch ganzer Organismen „tracken“. Besonders wichtig ist es ihm, elegante Verfahren zu entwickeln, die für eine ganze Reihe von Anwendungen funktionieren. Zum Interview

Patente

  • Jiang X, Klämbt C, Risse B, Valkov D. Verfahren und Vorrichtung zur Erfassung wenigsten eines Tieres. DE 102012016122; 20/02/2014.
  • Tenbrinck D, Stypmann J, Jiang X. Method and system for image segmentation. EP 2645329; 02/10/2013.

CiM-Publikationen

alle Publikationen von Xiaoyi Jiang

2018

Berh D, Scherzinger A, Otto N, Jiang X, Klambt C, Risse B. Automatic non-invasive heartbeat quantification of Drosophila pupae. Comput Biol Med 2018;93: 189-199. Abstract
Frohwein LJ, Hess M, Schlicher D, Bolwin K, Buther F, Jiang X, Schafers KP. PET attenuation correction for flexible MRI surface coils in hybrid PET/MRI using a 3D depth camera. Phys Med Biol 2018;63: 025033. Abstract
Michels T, Berh D, Jiang X. An RJMCMC-based method for tracking and resolving collisions of Drosophila Larvae. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2018: epub. Abstract

2017

Berh D, Risse B, Michels T, Otto N, Jiang X, Klambt C. An FIM-Based Long-Term In-Vial Monitoring System for Drosophila Larvae. IEEE Trans. Biomed. Eng. 2017;64: 1862-1874. Abstract
Bian A, Scherzinger A, Jiang X. An enhanced multi-label random walk for biomedical image segmentation using statistical seed generation. In: Blanc-Talon et al. (Eds.): ACIVS 2017, LNCS 10617 2017;Springer, Cham: 748–760. Abstract
Hagerling R, Drees D, Scherzinger A, Dierkes C, Martin-Almedina S, Butz S, Gordon K, Schafers M, Hinrichs K, Ostergaard P, Vestweber D, Goerge T, Mansour S, Jiang X, Mortimer PS, Kiefer F. VIPAR, a quantitative approach to 3D histopathology applied to lymphatic malformations. JCI Insight 2017;2Abstract
Risse B, Berh D, Otto N, Klambt C, Jiang X. FIMTrack: An open source tracking and locomotion analysis software for small animals. PLoS Comput Biol 2017;13: e1005530. Abstract
Risse B, Otto N, Berh D, Jiang X, Kiel M, Klambt C. FIM2c : A Multi-Colour, Multi-Purpose Imaging System to Manipulate and Analyse Animal Behaviour. IEEE Trans Biomed Eng 2017;64: 610-620. Abstract
Scherzinger A, Klemm S, Berh D, Jiang X. CNN-based background subtraction for long-term in-vial FIM imaging. In: Felsberg et al. (Eds.): Computer Analysis of Images and Patterns. CAIP 2017. LNCS 10424 2017;Springer, Cham: 359–371. Abstract
Seifert R, Scherzinger A, Kiefer F, Hermann S, Jiang X, Schafers MA. Statistical Permutation-based Artery Mapping (SPAM): a novel approach to evaluate imaging signals in the vessel wall. BMC Med Imaging 2017;17: 36. Abstract

2016

Bian A, Jiang X. Statistical Modeling Based Adaptive Parameter Setting for Random Walk Segmentation. Lect Notes Comput Sc 2016;10016: 698-710. Abstract
Otto N, Risse B, Berh D, Bittern J, Jiang X, Klambt C. Interactions among Drosophila larvae before and during collision. Sci Rep 2016;6: 31564. Abstract

2015

Jiang X, Percannella G, Vento M. A Verification-Based Multithreshold Probing Approach to HEp-2 Cell Segmentation. Lect Notes Comput Sc 2015;9257: 266-276. Abstract
Risse B, Berh D, Otto N, Jiang X, Klambt C. Quantifying subtle locomotion phenotypes of Drosophila larvae using internal structures based on FIM images. Comput Biol Med 2015;63: 269-276. Abstract
Schmid S, Jiang X, Schafers K. Puzzle Approach to Pose Tracking of a Rigid Object in a Multi Camera System. Lect Notes Comput Sc 2015;9256: 337-349. Abstract
Seebach J, Taha AA, Lenk J, Lindemann N, Jiang X, Brinkmann K, Bogdan S, Schnittler H-J. The CellBorderTracker, a novel tool to quantitatively analyze spatiotemporal endothelial junction dynamics at the subcellular level. Histochem Cell Biol 2015;144: 517-532. Abstract
Tenbrinck D, Jiang X. Image segmentation with arbitrary noise models by solving minimal surface problems. Pattern Recognition 2015;48: 3293-3309. Abstract
Wu Z, Jiang X, Zheng N, Cheng D. Efficient block-wise temporally consistent contour,extraction in image sequences. Neurocomputing 2015;152: 127-138. Abstract
Wu Z, Jiang X, Zheng N, Liu Y, Cheng D. Exact solution to median surface problem using 3D graph search and application to parameter space exploration. Pattern Recognition 2015;48: 380-390. Abstract

2014

Lammel U, Bechtold M, Risse B, Berh D, Fleige A, Bunse I, Jiang X, Klambt C, Bogdan S. The Drosophila FHOD1-like formin Knittrig acts through Rok to promote stress fiber formation and directed macrophage migration during the cellular immune response. Development 2014;141: 1366-1380. Abstract
Risse B, Otto N, Berh D, Jiang X, Klambt C. FIM imaging and FIMtrack: two new tools allowing high-throughput and cost effective locomotion analysis. J Vis Exp 2014: e52207. Abstract
Ungru K, Tenbrinck D, Jiang X, Stypmann J. Automatic classification of left ventricular wall segments in small animal ultrasound imaging. Comput Methods Programs Biomed 2014;117: 2-12. Abstract

2013

Dawood M, Gigengack F, Jiang X, Schäfers KP. A mass conservation-based optical flow method for cardiac motion correction in 3D-PET. Med Phys 2013;40: 012505. Abstract
Fieseler M, Kugel H, Gigengack F, Kösters T, Büther F, Quick HH, Faber C, Jiang X, Schäfers KP. A dynamic thorax phantom for the assessment of cardiac and respiratory motion correction in PET/MRI: A preliminary evaluation. Nucl Instrum Methods Phys Res A 2013;702: 59-63. Abstract
Gigengack F, Ruthotto L, Jiang X, Modersitzki J, Burger M, Hermann S, Schäfers KP. Atlas-Based Whole-Body PET-CT Segmentation using a Passive Contour Distance. Lect Notes Comput Sc 2013;7766: 82-92. Abstract
Jiang X, Dawood M, Gigengack F, Risse B, Schmid S, Tenbrinck D, Schäfers K. Biomedical imaging: A computer vision perspective. Lect Notes Comput Sc 2013;8047: 1-19. Abstract
Jiang X, Tenbrinck D. Region based contour detection by dynamic programming. Lect Notes Comput Sc 2013;8048: 152-159. Abstract
Risse B, Thomas S, Otto N, Lopmeier T, Valkov D, Jiang X, Klambt C. FIM, a novel FTIR-based imaging method for high throughput locomotion analysis. PLoS One 2013;8: e53963. Abstract
Sander M, Squarr AJ, Risse B, Jiang X, Bogdan S. Drosophila pupal macrophages--a versatile tool for combined ex vivo and in vivo imaging of actin dynamics at high resolution. Eur J Cell Biol 2013;92: 349-354. Abstract
Sawatzky A, Tenbrinck D, Jiang X, Burger M. A Variational Framework for Region-Based Segmentation Incorporating Physical Noise Models. J Math Imaging Vision 2013;47(3): 179-209. Abstract
Schmid S, Jiang X, Schäfers K. High-precision lens distortion correction using smoothed thin plate splines. Lect Notes Comput Sc 2013;8048: 432-439. Abstract
Tenbrinck D, Jiang X. Discriminant Analysis based Level Set Segmentation for Ultrasound Imaging. Lect Notes Comput Sc 2013;8048: 144-151. Abstract
Tenbrinck D, Schmid S, Jiang X, Schäfers K, Stypmann J. Histogram-based Optical Flow for Motion Estimation in Ultrasound Imaging. J Math Imaging Vision 2013;47(1): 138-150.