Research Foci
- Biomedical Imaging
- Robust Uncertainty Estimation
CV
Academic Education
- Promotionsstudium, Computer Vision & Machine Learning Systems Gruppe (Prof. Benjamin Risse)
- Promotionsstudium, Medical Machine Learning Lab (Prof. Tim Hahn)
- Master of Science (Informatik), Universität Münster
- Bachelor of Science (Informatik), Universität Münster
Honors
- Promotionspreis – Medizinische Fakultät der Universität Münster
- Paper of the Month – Medizinische Fakultät der Universität Münster
- Forschungsförderpreis – Maria-Möller-Stiftung
Publications
- Porschen, Christian and Ernsting, Jan and Brauckmann, Paul and Weiss, Raphael and Würdemann, Till and Booke, Hendrik and Amini, Wida and Maidowski, Ludwig and Risse, Benjamin and Hahn, and Tim and von Groote, Thilo. . “pyAKI—An open source solution to automated acute kidney injury classification.” PloS one 20 (1) e0315325.
- Ernsting, J, Beeken, PN, Ogoniak, L, Kockwelp, J, Roll, W, Hahn, T, Busch, AS, and Risse, B. . “Towards population scale testis volume segmentation in DIXON MRI.” Computers in Biology and Medicine 198: 111139–111139. doi: https://doi.org/10.1016/j.compbiomed.2025.111139.
- Moia, Stefano, Wang, Hao-Ting, Heinsfeld, S.Anibal, Jarecka, Dorota, Yang, Fang Yu, Heunis, Stephan, Svanera, Michele, Leener, DeBenjamin, Gondová, Andrea, Kim, Sin, Basavaraj, Arshitha, Bayer, M.M.Johanna, Bayrak, G.Roza, Bazin, Pierre-Louis, Bilgin, Poyraz Isil, Bollmann, Steffen, Borek, Daniel, Borghesani, Valentina, Cao, Trang, Chen, Gang, Vega, LaDe Alejandro, Dresbach, Sebastian, Ehses, Philipp, Ernsting, Jan, Esteves, Inês, Ferrante, Oscar, Garner, G.Kelly, Gau, Rémi, Germani, Elodie, Ghafari, Tara, Ghosh, S.Satrajit, Goodale, E.Sarah, Praag, van Gould D. Cassandra, Guay, Samuel, Gulban, Faruk Omer, Halchenko, O.Yaroslav, Hanke, Michael, Herholz, Peer, Heuer, Katja, Hoffstaedter, Felix, Huang, Ruoqi, Huber, Renzo, Jensen, Ole, Keeratimahat, Kan, Kosciessa, Q.Julian, Lukic, Sladjana, Magielse, Neville, Markiewicz, J.Christopher, Martin, G.Caroline, Maumet, Camille, Menacher, Anna, Mentch, Jeff, Mönch, Christian, More, Shammi, Muller-Rodriguez, Leonardo, Nastase, A.Samuel, Nicolaisen-Sobesky, Eliana, Nielson, M.Dylan, Nolan, R.Christopher, Paugam, François, Pinheiro-Chagas, Pedro, Pinho, Luísa Ana, Pizzuti, Alessandra, Poldrack, Benjamin, Poser, A.Benedikt, Rocca, Roberta, Sanz-Robinson, Jacob, Sarink, Kelvin, Sitek, R.Kevin, Spychala, Nadine, Stirnberg, Rüdiger, Szczepanik, Michał, Torabi, Mohammad, Toro, Roberto, Urchs, G.W.Sebastian, Valk, L.Sofie, Wagner, S.Adina, Waite, K.Laura, Waite, Q.Alexander, Waller, Lea, Wishard, J.Tyler, Wu, Jianxiao, Zhou, Yuchen, Bijsterbosch, D.Janine, and Community, Physiopy The. . “Proceedings of the OHBM Brainhack 2022.” Aperture Neuro 2014//4. doi: 10.52294/001c.92760.
- Winter, R.Nils, Blanke, Julian, Leenings, Ramona, Ernsting, Jan, Fisch, Lukas, Sarink, Kelvin, Barkhau, Carlotta, Emden, Daniel, Thiel, Katharina, Flinkenflügel, Kira, Winter, Alexandra, Goltermann, Janik, Meinert, Susanne, Dohm, Katharina, Repple, Jonathan, Gruber, Marius, Leehr, J.Elisabeth, Opel, Nils, Grotegerd, Dominik, Redlich, Ronny, Nitsch, Robert, Bauer, Jochen, Heindel, Walter, Gross, Joachim, Risse, Benjamin, Andlauer, M.F. Till, Forstner, J.Andreas, Nöthen, M.Markus, Rietschel, Marcella, Hofmann, G.Stefan, Pfarr, Julia-Katharina, Teutenberg, Lea, Usemann, Paula, Thomas-Odenthal, Florian, Wroblewski, Adrian, Brosch, Katharina, Stein, Frederike, Jansen, Andreas, Jamalabadi, Hamidreza, Alexander, Nina, Straube, Benjamin, Nenadić, Igor, Kircher, Tilo, Dannlowski, Udo, and Hahn, Tim. . “A Systematic Evaluation of Machine Learning–Based Biomarkers for Major Depressive Disorder.” JAMA Psychiatry 2024/4/81. doi: 10.1001/jamapsychiatry.2023.5083.
- Porschen, C, Ernsting, J, Brauckmann, P, Weiss, R, Würdemann, T, Booke, H, Amini, W, Maidowski, L, Risse, B, Hahn, T, and Groote, T. . “pyAKI - An Open Source Solution to Automated KDIGO classification.” Preprint. arXiv doi: 10.48550/arXiv.2401.12930.
- Fisch, L., Zumdick, S., Barkhau, C., Emden, D., Ernsting, J., Leenings, R., Sarink, K., Winter, N.R., Risse, B., Dannlowski, U., and Hahn, T. . “deepbet: Fast brain extraction of T1-weighted MRI using Convolutional Neural Networks.” Computers in Biology and Medicine 179. doi: 10.1016/j.compbiomed.2024.108845.
- L., Fisch, M., Heming, A., Schulte-Mecklenbeck, C.C., Gross, S., Zumdick, C., Barkhau, D., Emden, J., Ernsting, R., Leenings, K., Sarink, N.R., Winter, U., Dannlowski, H., Wiendl, G.M.z., Hörste, and T., Hahn. . “GateNet: A novel neural network architecture for automated flow cytometry gating.” Computers in Biology and Medicine 179. doi: 10.1016/j.compbiomed.2024.108820.
- Hahn, T, Winter, NR, Ernsting, J, Gruber, M, Mauritz, MJ, Fisch, L, Leenings, R, Sarink, K, Blanke, J, Holstein, V, Emden, D, Beisemann, M, Opel, N, Grotegerd, D, Meinert, S, Witt, S, Heindel, W, Nöthen, MM, Rietschel, M, Kircher, T, Forstner, AJ, Jansen, A, Nenadic, I, Andlauer, TFM, Müller-Myhsok, B, van den, Heuvel MP, Walter, M, Dannlowski, U, Jamalabadi, H, and Repple, J. . “Genetic, individual, and familial risk correlates of brain network controllability in major depressive disorder.” Molecular Psychiatry 28 (3): 1057–1063. doi: 10.1038/s41380-022-01936-6.
- Hahn, Tim, Jamalabadi, Hamidreza, Nozari, Erfan, Winter, Nils R., Ernsting, Jan, Gruber, Marius, Mauritz, Marco J., Grumbach, Pascal, Fisch, Lukas, Leenings, Ramona, Sarink, Kelvin, Blanke, Julian, Vennekate, Leon Kleine, Emden, Daniel, Opel, Nils, Grotegerd, Dominik, Enneking, Verena, Meinert, Susanne, Borgers, Tiana, Klug, Melissa, Leehr, Elisabeth J., Dohm, Katharina, Heindel, Walter, Gross, Joachim, Dannlowski, Udo, Redlich, Ronny, and Repple, Jonathan. . “Towards a network control theory of electroconvulsive therapy response.” PNAS Nexus 2 (2). doi: 10.1093/pnasnexus/pgad032.
- Hahn, T, Ernsting, J, Winter, NR, Holstein, V, Leenings, R, Beisemann, M, Fisch, L, Sarink, K, Emden, D, Opel, N, Redlich, R, Repple, J, Grotegerd, D, Meinert, S, Hirsch, JG, Niendorf, T, Endemann, B, Bamberg, F, Kröncke, T, Bülow, R, Völzke, H, von Stackelberg, O, Sowade, RF, Umutlu, L, Schmidt, B, Caspers, S, Kugel, H, Kircher, T, Risse, B, Gaser, C, Cole, JH, Dannlowski, U, and Berger, K. . “An Uncertainty-Aware, Shareable and Transparent Neural Network Architecture for Brain-Age Modeling.” Science advances 8 (1): eabg9471–eabg9471. doi: 10.1126/sciadv.abg9471.
- Leenings, R, Winter, NR, Plagwitz, L, Holstein, V, Ernsting, J, Sarink, K, Fisch, L, Steenweg, J, Kleine-Vennekate, L, Gebker, J, Emden, D, Grotegerd, D, Opel, N, Risse, B, Jiang, X, Dannlowski, U, and Hahn, T. . “PHOTONAI-A Python API for rapid machine learning model development.” PloS one 16. doi: 10.1371/journal.pone.0254062.
- Hahn, T, Fisch, L, Ernsting, J, Winter, NR, Leenings, R, Sarink, K, Emden, D, Kircher, T, Berger, K, and Dannlowski, U. . “From ‘Loose Fitting’ to High-Performance, Uncertainty-Aware Brain-Age Modelling.” Brain 144 (3) e31. doi: 10.1093/brain/awaa454.
- Sandmann, Sarah, Karimi, Mohsen, de Graaf, Aniek O, Rohde, Christian, Göllner, Stefanie, Varghese, Julian, Ernsting, Jan, Walldin, Gunilla, van der Reijden, Bert A, Müller-Tidow, Carsten, Malcovati, Luca, Hellström-Lindberg, Eva, Jansen, Joop H, and Dugas, Martin. . “appreci8: a pipeline for precise variant calling integrating 8 tools.” Bioinformatics 2018/24/34. doi: 10.1093/bioinformatics/bty518.
- Brix, TJ, Bruland, P, Sarfraz, S, Ernsting, J, Neuhaus, P, Storck, M, Doods, J, Ständer, S, and Dugas, M. . “ODM Data Analysis-A tool for the automatic validation, monitoring and generation of generic descriptive statistics of patient data.” PloS one 13. doi: 10.1371/journal.pone.0199242.
Scientific Talk
- Ernsting, Jan : “An uncertainty-aware, shareable, and transparent neural network architecture for brain-age modeling”. Virtual St. Andrews-Bonn meeting: Early career focus - focused on techniques rather than results, Online, .
