Research Foci
- Biomedical Imaging
- Robust Uncertainty Estimation
CV
Academic Education
- Promotionsstudium, Computer Vision & Machine Learning Systems Gruppe (Prof. Benjamin Risse)
- Promotionsstudium, Medical Machine Learning Lab (Prof. Tim Hahn)
- Master of Science (Informatik), Universität Münster
- Bachelor of Science (Informatik), Universität Münster
Honors
- Promotionspreis – Medizinische Fakultät der Universität Münster
- Paper of the Month – Medizinische Fakultät der Universität Münster
- Forschungsförderpreis – Maria-Möller-Stiftung
Publications
- Porschen, Christian and Ernsting, Jan and Brauckmann, Paul and Weiss, Raphael and Würdemann, Till and Booke, Hendrik and Amini, Wida and Maidowski, Ludwig and Risse, Benjamin and Hahn, and Tim and von Groote, Thilo. . “pyAKI—An open source solution to automated acute kidney injury classification.” PloS one, № 20 (1) e0315325.
- Moia, Stefano, Wang, Hao-Ting, Heinsfeld, S.Anibal, Jarecka, Dorota, Yang, Fang Yu, Heunis, Stephan, Svanera, Michele, Leener, DeBenjamin, Gondová, Andrea, Kim, Sin, Basavaraj, Arshitha, Bayer, M.M.Johanna, Bayrak, G.Roza, Bazin, Pierre-Louis, Bilgin, Poyraz Isil, Bollmann, Steffen, Borek, Daniel, Borghesani, Valentina, Cao, Trang, Chen, Gang, Vega, LaDe Alejandro, Dresbach, Sebastian, Ehses, Philipp, Ernsting, Jan, Esteves, Inês, Ferrante, Oscar, Garner, G.Kelly, Gau, Rémi, Germani, Elodie, Ghafari, Tara, Ghosh, S.Satrajit, Goodale, E.Sarah, Praag, van Gould D. Cassandra, Guay, Samuel, Gulban, Faruk Omer, Halchenko, O.Yaroslav, Hanke, Michael, Herholz, Peer, Heuer, Katja, Hoffstaedter, Felix, Huang, Ruoqi, Huber, Renzo, Jensen, Ole, Keeratimahat, Kan, Kosciessa, Q.Julian, Lukic, Sladjana, Magielse, Neville, Markiewicz, J.Christopher, Martin, G.Caroline, Maumet, Camille, Menacher, Anna, Mentch, Jeff, Mönch, Christian, More, Shammi, Muller-Rodriguez, Leonardo, Nastase, A.Samuel, Nicolaisen-Sobesky, Eliana, Nielson, M.Dylan, Nolan, R.Christopher, Paugam, François, Pinheiro-Chagas, Pedro, Pinho, Luísa Ana, Pizzuti, Alessandra, Poldrack, Benjamin, Poser, A.Benedikt, Rocca, Roberta, Sanz-Robinson, Jacob, Sarink, Kelvin, Sitek, R.Kevin, Spychala, Nadine, Stirnberg, Rüdiger, Szczepanik, Michał, Torabi, Mohammad, Toro, Roberto, Urchs, G.W.Sebastian, Valk, L.Sofie, Wagner, S.Adina, Waite, K.Laura, Waite, Q.Alexander, Waller, Lea, Wishard, J.Tyler, Wu, Jianxiao, Zhou, Yuchen, Bijsterbosch, D.Janine, and Community, Physiopy The. . “Proceedings of the OHBM Brainhack 2022.” Aperture Neuro, № 2014//4 doi: 10.52294/001c.92760.
- Winter, R.Nils, Blanke, Julian, Leenings, Ramona, Ernsting, Jan, Fisch, Lukas, Sarink, Kelvin, Barkhau, Carlotta, Emden, Daniel, Thiel, Katharina, Flinkenflügel, Kira, Winter, Alexandra, Goltermann, Janik, Meinert, Susanne, Dohm, Katharina, Repple, Jonathan, Gruber, Marius, Leehr, J.Elisabeth, Opel, Nils, Grotegerd, Dominik, Redlich, Ronny, Nitsch, Robert, Bauer, Jochen, Heindel, Walter, Gross, Joachim, Risse, Benjamin, Andlauer, M.F. Till, Forstner, J.Andreas, Nöthen, M.Markus, Rietschel, Marcella, Hofmann, G.Stefan, Pfarr, Julia-Katharina, Teutenberg, Lea, Usemann, Paula, Thomas-Odenthal, Florian, Wroblewski, Adrian, Brosch, Katharina, Stein, Frederike, Jansen, Andreas, Jamalabadi, Hamidreza, Alexander, Nina, Straube, Benjamin, Nenadić, Igor, Kircher, Tilo, Dannlowski, Udo, and Hahn, Tim. . “A Systematic Evaluation of Machine Learning–Based Biomarkers for Major Depressive Disorder.” JAMA Psychiatry, № 2024/4/81 doi: 10.1001/jamapsychiatry.2023.5083.
- Porschen, C, Ernsting, J, Brauckmann, P, Weiss, R, Würdemann, T, Booke, H, Amini, W, Maidowski, L, Risse, B, Hahn, T, and Groote, T. . “pyAKI - An Open Source Solution to Automated KDIGO classification.” Preprint. arXiv doi: 10.48550/arXiv.2401.12930.
- Fisch, L., Zumdick, S., Barkhau, C., Emden, D., Ernsting, J., Leenings, R., Sarink, K., Winter, N.R., Risse, B., Dannlowski, U., and Hahn, T. . “deepbet: Fast brain extraction of T1-weighted MRI using Convolutional Neural Networks.” Computers in Biology and Medicine, № 179 doi: 10.1016/j.compbiomed.2024.108845.
- L., Fisch, M., Heming, A., Schulte-Mecklenbeck, C.C., Gross, S., Zumdick, C., Barkhau, D., Emden, J., Ernsting, R., Leenings, K., Sarink, N.R., Winter, U., Dannlowski, H., Wiendl, G.M.z., Hörste, and T., Hahn. . “GateNet: A novel neural network architecture for automated flow cytometry gating.” Computers in Biology and Medicine, № 179 doi: 10.1016/j.compbiomed.2024.108820.
- Hahn, T, Winter, NR, Ernsting, J, Gruber, M, Mauritz, MJ, Fisch, L, Leenings, R, Sarink, K, Blanke, J, Holstein, V, Emden, D, Beisemann, M, Opel, N, Grotegerd, D, Meinert, S, Witt, S, Heindel, W, Nöthen, MM, Rietschel, M, Kircher, T, Forstner, AJ, Jansen, A, Nenadic, I, Andlauer, TFM, Müller-Myhsok, B, van den, Heuvel MP, Walter, M, Dannlowski, U, Jamalabadi, H, and Repple, J. . “Genetic, individual, and familial risk correlates of brain network controllability in major depressive disorder.” Molecular Psychiatry, № 28 (3): 1057–1063. doi: 10.1038/s41380-022-01936-6.
- Hahn, Tim, Jamalabadi, Hamidreza, Nozari, Erfan, Winter, Nils R., Ernsting, Jan, Gruber, Marius, Mauritz, Marco J., Grumbach, Pascal, Fisch, Lukas, Leenings, Ramona, Sarink, Kelvin, Blanke, Julian, Vennekate, Leon Kleine, Emden, Daniel, Opel, Nils, Grotegerd, Dominik, Enneking, Verena, Meinert, Susanne, Borgers, Tiana, Klug, Melissa, Leehr, Elisabeth J., Dohm, Katharina, Heindel, Walter, Gross, Joachim, Dannlowski, Udo, Redlich, Ronny, and Repple, Jonathan. . “Towards a network control theory of electroconvulsive therapy response.” PNAS Nexus, № 2 (2) doi: 10.1093/pnasnexus/pgad032.
- Hahn, T, Ernsting, J, Winter, NR, Holstein, V, Leenings, R, Beisemann, M, Fisch, L, Sarink, K, Emden, D, Opel, N, Redlich, R, Repple, J, Grotegerd, D, Meinert, S, Hirsch, JG, Niendorf, T, Endemann, B, Bamberg, F, Kröncke, T, Bülow, R, Völzke, H, von Stackelberg, O, Sowade, RF, Umutlu, L, Schmidt, B, Caspers, S, Kugel, H, Kircher, T, Risse, B, Gaser, C, Cole, JH, Dannlowski, U, and Berger, K. . “An Uncertainty-Aware, Shareable and Transparent Neural Network Architecture for Brain-Age Modeling.” Science advances, № 8 (1): eabg9471–eabg9471. doi: 10.1126/sciadv.abg9471.
- Leenings, R, Winter, NR, Plagwitz, L, Holstein, V, Ernsting, J, Sarink, K, Fisch, L, Steenweg, J, Kleine-Vennekate, L, Gebker, J, Emden, D, Grotegerd, D, Opel, N, Risse, B, Jiang, X, Dannlowski, U, and Hahn, T. . “PHOTONAI-A Python API for rapid machine learning model development.” PloS one, № 16 doi: 10.1371/journal.pone.0254062.
- Hahn, T, Fisch, L, Ernsting, J, Winter, NR, Leenings, R, Sarink, K, Emden, D, Kircher, T, Berger, K, and Dannlowski, U. . “From ‘Loose Fitting’ to High-Performance, Uncertainty-Aware Brain-Age Modelling.” Brain, № 144 (3) e31. doi: 10.1093/brain/awaa454.
- Sandmann, Sarah, Karimi, Mohsen, de Graaf, Aniek O, Rohde, Christian, Göllner, Stefanie, Varghese, Julian, Ernsting, Jan, Walldin, Gunilla, van der Reijden, Bert A, Müller-Tidow, Carsten, Malcovati, Luca, Hellström-Lindberg, Eva, Jansen, Joop H, and Dugas, Martin. . “appreci8: a pipeline for precise variant calling integrating 8 tools.” Bioinformatics, № 2018/24/34 doi: 10.1093/bioinformatics/bty518.
- Brix, TJ, Bruland, P, Sarfraz, S, Ernsting, J, Neuhaus, P, Storck, M, Doods, J, Ständer, S, and Dugas, M. . “ODM Data Analysis-A tool for the automatic validation, monitoring and generation of generic descriptive statistics of patient data.” PloS one, № 13 doi: 10.1371/journal.pone.0199242.
Scientific Talk
- Ernsting, Jan : “An uncertainty-aware, shareable, and transparent neural network architecture for brain-age modeling”. Virtual St. Andrews-Bonn meeting: Early career focus - focused on techniques rather than results, Online, .
