GLYCO-LINKS

Web-resources related to the primary structure of carbohydrates

1. IUPAC-IUBMB Nomenclature of Carbohydrates
   International Union of Pure and Applied Chemistry, International Union of Biochemistry and Molecular Biology
   www.chem.qmw.ac.uk/iupac/2carb/
2. LINUCS LInear Notation for Unique description of Carbohydrate Structure
   www.dkfz-heidelberg.de/spec/linucs/
3. CCSD - Complex Carbohydrate Structure Database (CarbBank)
   www.boc.chem.uu.nl/sugabase/databases.html
4. SugaBase
   www.boc.chem.uu.nl/sugabase/databases.html
5. SweetDB
   www.dkfz-heidelberg.de/spec2/sweetdb/
   links to PubMed, Subito, 3D-structure & Mass data
6. GlycoBase of USTL
   glycobase.univ-lille1.fr/base/
   

Tools for the analysis of NMR and MS data

1. ECDB - E. coli O-antigen database
   Structure and NMR data of E. coli LPS
   www.casper.organ.su.se/ECDB/
   links to PubMed, CarbBank, CCUG, ATCC
2. SPECARB - Raman spectra of carbohydrates
   www.models.kvl.dk/users/engelsen/specarb/specarb.html
3. CASPER - Computer Aided SPectrum Evaluation of Regular polysaccharides
   Simulation of NMR data
   www.casper.organ.su.se/casper/
4. GlycoFragment
   Simulation of mass spectra
   www.dkfz-heidelberg.de/spec/projekte/fragments/
   

Conformation of carbohydrates and glycoproteins

1. PDB - Protein Data Ban
   www.rcsb.org/pdb/
2. Pdb2Linucs – Annotaded Protein Data Bank
   www.dkfz-heidelberg.de/spec/pdb2linucs/
3. HIC-Up (Hetero-compound Information Centre – Uppsala)
   alpha2.bmc.uu.se/hicup/
4. Image Library of Biological Macromolecules
   www.imb-jena.de/ImgLibPDB/pages/carb.html
5. Het-PDB Navi
   daisy.bio.nagoya-u.ac.jp/golab/hetpdbnavi.html
6. GlycoMaps Database – Conformational maps of disaccharides
   www.dkfz-heidelberg.de/spec/glycomaps/
7. SWEET-II
   A program for constructing 3D models of saccharides from their sequences using standard nomenclature
   www.dkfz-heidelberg.de/spec/sweet2/
8. Glydic
   A web tool for predicting n-glycan structures based on md-simulations with mm3 force field
   www.dkfz-heidelberg.de/spec/glydict/
   

Databases of Enzymes and Lectins

1. CAZY - Carbohydrate Active enZYmes
   www.cazy.org/
   links to NiceZyme (ExPASy), Taxonomy Browser (NBCI), Entrez Nucleotide/Protein (NBCI), TrEMBL (ExPASy), PDB
2. BPGD - Bacterial Polysaccharide Gene Database
   www.microbio.usyd.edu.au/BPGD/default.htm
3. 3D Lectin Database
   www.cermav.cnrs.fr/lectines/
   links to Medline, PDB, HSSP, SCOP
4. Torkild's Lectin Page
   plab.ku.dk/tcbh/lectin-links.htm
   

Databases and prediction tools related to glycoproteins

1. O-GlycBas
   www.cbs.dtu.dk/databases/OGLYCBASE/
2. FindMo
   www.expasy.org/tools/findmod/
3. GlycoMod Tool/GlycanMas
   www.expasy.org/tools/glycomod/
4. Glypeps - Accurate Mass & Peptide Modificatio
   www.dkfz-heidelberg.de/spec/glypeps/
5. NetOGlyc
   www.cbs.dtu.dk/services/NetOGlyc/
6. DictyOGlyc
   www.cbs.dtu.dk/services/DictyOGlyc/
7. NetNGlyc
   www.cbs.dtu.dk/services/NetNGlyc/
8. YinOYang
   www.cbs.dtu.dk/services/YinOYang/

Glyco related Societies

1. EUCHIS - European Chitin Society
   www.euchis.org/
   

• Glyco-Links
• Upcoming Events
• MCGS-Flyer

• :: Recommend Page
• :: Comment on this page, Link will be opened in a new window