Professor Dr. Shuqing Xu

• 2021
• 2020
• 2019
• 2017
• 2016
• 2015
• 2013
• 2012
• 2011
• 2008
• 2007
• 2006
• 2005

2021

• Acosta, K, Appenroth, KJ, Borisjuk, L, Edelman, M, Heinig, U, Jansen, MAK, Oyama, T, Pasaribu, B, Schubert, I, Sorrels, S, Sree, KS, Xu, S, Michael, TP, and Lam, E. 2021. “Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era.” The Plant cell koab189. doi: 10.1093/plcell/koab189.
• Li, J, Halitschke, R, Li, D, Paetz, C, Su, H, Heiling, S, Xu, S, and Baldwin, IT. 2021. “Controlled hydroxylations of diterpenoids allow for plant chemical defense without autotoxicity.” Science 371 (6526): 255–260.
• Ke, L, Wang, Y, Schäfer, M, Städler, T, Zeng, R, Fabian, J, Pulido, H, De, Moraes CM, Song, Y, and Xu, S. 2021. “Transcriptomic profiling reveals shared signalling networks between flower development and herbivory-induced responses in tomato.” Frontiers in Plant Science 12: 722810.. doi: 10.3389/fpls.2021.722810.

2020

• Zeng, X, Xu, T, Ling, Z, Wang, Y, Li, X, Xu, S, Xu, Q, Zha, S, Qimei, W, Basang, Y, Dunzhu, J, Yu, M, Yuan, H, and Nyima, T. 2020. “An improved high-quality genome assembly and annotation of Tibetan hulless barley.” Scientific data 7 (1): 139. doi: 10.1038/s41597-020-0480-0.
• Bog, M, Xu, S, Himmelbach, A, Brandt, R, Wagner, F, Appenroth, K, and Sree, KS. 2020. “Genotyping-by-Sequencing for Species Delimitation in Lemna Section Uninerves Hegelm. (Lemnaceae).” in The Duckweed Genomes, edited by XH Cao, P Fourounjian and W Wang. Cham. doi: 10.1007/978-3-030-11045-1_11.
• Xu, S, Kreitzer, C, McGale, E, Lackus, ND, Guo, H, Köllner, TG, Schuman, MC, Baldwin, IT, and Zhou, W. 2020. “Allelic differences of clustered terpene synthases contribute to correlated intra-specific variation of floral and herbivory-induced volatiles in a wild tobacco.” New Phytologist na (na). doi: 10.1111/nph.16739.

2019

• Guo, H, Lackus, ND, Köllner, TG, Li, R, Bing, J, Wang, Y, Baldwin, IT, and Xu, S. 2019. “Evolution of a novel and adaptive floral scent in wild tobacco.” Molecular Biology and Evolution 2019. doi: 10.1093/molbev/msz292.
• Ling, Z, Brockmöller, T, Baldwin, IT, and Xu, S. 2019. “Evolution of Alternative Splicing in Eudicots.” Frontiers in Plant Science 10: 707. doi: 10.3389/fpls.2019.00707.
• Liu, Y, Wang, Y, Xu, S, Tang, X, Zhao, J, Yu, C, Zhou, G, He, G, Xu, H, Wang, S, Tang, Y, Fu, C, and Ma, Y. 2019. “Efficient genetic transformation and CRISPR/Cas9-mediated genome editing in Lemna aequinoctialis.” Plant Biotechnology Journal, № ja. doi: 10.1111/pbi.13128.
• Xu, S, Stapley, J, Gablenz, S, Boyer, J, Appenroth, KJ, Sree, KS, Gershenzon, J, Widmer, A, and Huber, M. 2019. “Low genetic variation is associated with low mutation rate in the giant duckweed.” Nature Communications 10 (1): 1243. doi: 10.1038/s41467-019-09235-5.

2017

• Xu, S, Brockmoller, T, Navarro-Quezada, A, Kuhl, H, Gase, K, Ling, Z, Zhou, W, Kreitzer, C, Stanke, M, Tang, H, Lyons, E, Pandey, P, Pandey, SP, Timmermann, B, Gaquerel, E, and Baldwin, IT. 2017. “Wild tobacco genomes reveal the evolution of nicotine biosynthesis.” Proceedings of the National Academy of Sciences of the United States of America 114 (23): 6133–6138. doi: 10.1073/pnas.1700073114.
• Zhou, W, Kugler, A, McGale, E, Haverkamp, A, Knaden, M, Guo, H, Beran, F, Yon, F, Li, R, Lackus, N, Kollner, TG, Bing, J, Schuman, MC, Hansson, BS, Kessler, D, Baldwin, IT, and Xu, S. 2017. “Tissue-specific emission of (E)-alpha-bergamotene helps resolve the dilemma when pollinators are also herbivores.” Current biology 27 (9): 1336–1341. doi: 10.1016/j.cub.2017.03.017.
• Machado, RAR, Zhou, W, Ferrieri, AP, Arce, CCM, Baldwin, IT, Xu, S, and Erb, M. 2017. “Species-specific regulation of herbivory-induced defoliation tolerance is associated with jasmonate inducibility.” Ecology and Evolution 7 (11): 3703–3712. doi: 10.1002/ece3.2953.
• Luu, VT, Weinhold, A, Ullah, C, Dressel, S, Schoettner, M, Gase, K, Gaquerel, E, Xu, S, and Baldwin, IT. 2017. “O-Acyl sugars protect a wild tobacco from both native fungal pathogens and a specialist herbivore.” Plant Physiology 174 (1): 370–386. doi: 10.1104/pp.16.01904.
• Brockmoller, T, Ling, Z, Li, D, Gaquerel, E, Baldwin, IT, and Xu, S. 2017. “Nicotiana attenuata Data Hub (NaDH): an integrative platform for exploring genomic, transcriptomic and metabolomic data in wild tobacco.” BMC Genomics 18 (1): 79.. doi: 10.1186/s12864-016-3465-9.
• Schäfer, M, Brütting, C, Xu, S, Ling, Z, Steppuhn, A, Baldwin, IT, and Schuman, MC. 2017. “NaMYB8 regulates distinct, optimally distributed herbivore defense traits.” Journal of Integrative Plant Biology 59 (12): 844–850. doi: 10.1111/jipb.12593.
• Byers, KJ, Xu, S, and Schluter, PM. 2017. “Molecular mechanisms of adaptation and speciation: why do we need an integrative approach?” Molecular Ecology 26 (1): 277–290. doi: 10.1111/mec.13678.
• Rogers, SM, Xu, S, and Schluter, PM. 2017. “Introduction: integrative molecular ecology is rapidly advancing the study of adaptation and speciation.” Molecular Ecology 26 (1): 1–6. doi: 10.1111/mec.13947.
• Durrant, M, Boyer, J, Zhou, W, Baldwin, IT, and Xu, S. 2017. “Evidence of an evolutionary hourglass pattern in herbivory-induced transcriptomic responses.” New Phytologist 215 (3): 1264–1273. doi: 10.1111/nph.14644.
• Wang, M, Schoettner, M, Xu, S, Paetz, C, Wilde, J, Baldwin, IT, and Groten, K. 2017. “Catechol, a major component of smoke, influences primary root growth and root hair elongation through reactive oxygen species-mediated redox signaling.” New Phytologist 213 (4): 1755–1770. doi: 10.1111/nph.14317.

2016

• Zhou, W, Brockmoller, T, Ling, Z, Omdahl, A, Baldwin, IT, and Xu, S. 2016. “Evolution of herbivore-induced early defense signaling was shaped by genome-wide duplications in Nicotiana.” eLife 5. doi: 10.7554/eLife.19531.
• Machado, RA, Robert, CA, Arce, CC, Ferrieri, AP, Xu, S, Jimenez-Aleman, GH, Baldwin, IT, and Erb, M. 2016. “Auxin is rapidly induced by herbivore attack and regulates a subset of systemic, jasmonate-dependent defenses.” Plant Physiology 172 (1): 521–532. doi: 10.1104/pp.16.00940.

2015

• Groten, K, Pahari, NT, Xu, S, Miloradovi, vDM, and Baldwin, IT. 2015. “Virus-induced gene silencing using tobacco rattle virus as a tool to study the interaction between Nicotiana attenuata and Rhizophagus irregularis.” PloS one 10 (8): e0136234.. doi: 10.1371/journal.pone.0136234.
• Xu, S, Zhou, W, and Baldwin, IT. 2015. “The rapidly evolving associations among herbivore associated elicitor-induced phytohormones in Nicotiana.” Plant Signal and Behaviour 10 (7): e1035850.. doi: 10.1080/15592324.2015.1035850.
• Xu, S, and Schluter, PM. 2015. “Modeling the two-locus architecture of divergent pollinator adaptation: how variation in SAD paralogs affects fitness and evolutionary divergence in sexually deceptive orchids.” Ecology and Evolution 5 (2): 493–502. doi: 10.1002/ece3.1378.
• Ling, Z, Zhou, W, Baldwin, IT, and Xu, S. 2015. “Insect herbivory elicits genome-wide alternative splicing responses in Nicotiana attenuata.” The Plant journal 84 (1): 228–243. doi: 10.1111/tpj.12997.
• Xu, S, Zhou, W, Pottinger, S, and Baldwin, IT. 2015. “Herbivore associated elicitor-induced defences are highly specific among closely related Nicotiana species.” BMC Plant Biology 15: 2.. doi: 10.1186/s12870-014-0406-0.

2013

• Sedeek, KE, Qi, W, Schauer, MA, Gupta, AK, Poveda, L, Xu, S, Liu, ZJ, Grossniklaus, U, Schiestl, FP, and Schluter, PM. 2013. “Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids.” PloS one 8 (5): e64621.. doi: 10.1371/journal.pone.0064621.
• Breitkopf, H, Schluter, PM, Xu, S, Schiestl, FP, Cozzolino, S, and Scopece, G. 2013. “Pollinator shifts between Ophrys sphegodes populations: might adaptation to different pollinators drive population divergence?” Journal of Evolutionary Biology 26 (10): 2197–208. doi: 10.1111/jeb.12216.

2012

• Xu, S, Schluter, PM, Grossniklaus, U, and Schiestl, FP. 2012. “The genetic basis of pollinator adaptation in a sexually deceptive orchid.” PLOS Genetics 8 (8): e1002889.. doi: 10.1371/journal.pgen.1002889.

2011

• Xu, S, Schlüter, PM, and Schiestl, FP. 2011. “Pollinator-driven speciation in sexually deceptive orchids.” International Journal of Ecology 2012. doi: 10.1155/2012/285081.
• Schluter, PM, Xu, S, Gagliardini, V, Whittle, E, Shanklin, J, Grossniklaus, U, and Schiestl, FP. 2011. “Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids.” Proceedings of the National Academy of Sciences of the United States of America 108 (14): 5696–701. doi: 10.1073/pnas.1013313108.
• Xu, S, Schluter, PM, Scopece, G, Breitkopf, H, Gross, K, Cozzolino, S, and Schiestl, FP. 2011. “Floral isolation is the main reproductive barrier among closely related sexually deceptive orchids.” Evolution 65 (9): 2606–2620. doi: 10.1111/j.1558-5646.2011.01323.x.

2008

• Xu, S, Clark, T, Zheng, H, Vang, S, Li, R, Wong, GK, Wang, J, and Zheng, X. 2008. “Gene conversion in the rice genome.” BMC Genomics 9: 93.. doi: 10.1186/1471-2164-9-93.

2007

• Xu, S, Luosang, J, Hua, S, He, J, Ciren, A, Wang, W, Tong, X, Liang, Y, Wang, J, and Zheng, X. 2007. “High altitude adaptation and phylogenetic analysis of Tibetan horse based on the mitochondrial genome.” Journal of Genetics and Genomics 34 (8): 720–729. doi: 10.1016/S1673-8527(07)60081-2.
• Wang, W, Wang, C, Xu, S, Chen, C, Tong, X, Liang, Y, Dong, X, Lei, Y, Zheng, X, Yu, J, and Wang, J. 2007. “Detection of HPV-2 and identification of novel mutations by whole genome sequencing from biopsies of two patients with multiple cutaneous horns.” Journal of Clinic Virology 39 (1): 34–42. doi: 10.1016/j.jcv.2007.01.002.

2006

• Tong, XM, Liang, Y, Wang, W, Xu, SQ, Zheng, XG, Wang, J, and Yu, J. 2006. “Complete sequence and gene organization of the Tibetan chicken mitochondrial genome.” Yi Chuan 28 (7): 769–777.

2005

• Xu, SQ, Yang, YZ, Zhou, J, Jing, GE, Chen, YT, Wang, J, Yang, HM, Wang, J, Yu, J, Zheng, XG, and Ge, RL. 2005. “A mitochondrial genome sequence of the Tibetan antelope (Pantholops hodgsonii).” Genomics Proteomics and Bioinformatics 3 (1): 5–17.