Welcome to Proteomatic

Proteomatic is a free data processing pipeline created for the purpose of evaluating mass spectrometric proteomics experiments. Functionality is provided via scripts, and these scripts can be chained together into a high-throughput data processing pipeline.

All functionality can be used either from the command-line or via a GUI (graphical user interface).

Proteomatic automatically downloads necessary software packages such as OMSSA or BLAST when they are required, so it’s easy to get up and running.

Proteomatic is available for Windows, Mac OS X and Linux at the download page.

Bioinformatics applications note

Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows
Specht M., Kuhlgert S., Fufezan C., Hippler M.
Bioinformatics (2011) 27(8): 1183-1184, doi: 10.1093/bioinformatics/btr081