Dr. Aaron Scherzinger

• Biomedical Image Processing and Analysis
• Pattern Recognition and Machine Learning
• Scientific Visualization and Computer Graphics

2015

SciVis Contest Award – IEEE VIS: Visualization & Visual Analytics

Summer Term 2019

• Project seminar: Projektseminar: Barista [106120]
  (in cooperation with Dominik Drees, Sören Klemm, Xiaoyi Jiang and Benjamin Risse)

Winter Term 2018/19

• Seminar: Seminar: Deep Learning [104121]
  (in cooperation with Sören Klemm, Xiaoyi Jiang and Benjamin Risse)
• Project seminar: Projektseminar: Towards Smart 3D Printing [104123]
  (in cooperation with Benjamin Risse)
• Project seminar: Projektseminar: Barista [104120]
  (in cooperation with Dominik Drees, Sören Klemm, Xiaoyi Jiang and Benjamin Risse)

Summer Term 2018

• Seminar: Seminar: Maschinelles Lernen und Deep Learning [102117]
  (in cooperation with Sören Klemm, Xiaoyi Jiang and Benjamin Risse)
• Project seminar: Projektseminar: Barista for Deep Learning-based Bug Tracking [102116]
  (in cooperation with Dominik Drees, Sören Klemm, Xiaoyi Jiang and Benjamin Risse)

Winter Term 2017/18

• Seminar: Seminar: Maschinelles Lernen und Deep Learning [100122]
  (in cooperation with Sören Klemm and Xiaoyi Jiang)
• Project seminar: Projektseminar: Barista - A Rapid Prototyping Tool for Neural Networks [100121]
  (in cooperation with Dominik Drees, Sören Klemm and Xiaoyi Jiang)

Summer Term 2017

• Lecture: Informatik II - Datenstrukturen und Algorithmen [108381]
  (in cooperation with Klaus Hinrichs)
• Project seminar: Projektseminar: Barista - A Rapid Prototyping Tool for Neural Networks [108414]
  (in cooperation with Sören Klemm and Xiaoyi Jiang)
• Practice: Übungen zur Informatik II - Datenstrukturen und Algorithmen [108382]
  (in cooperation with Klaus Hinrichs)

Winter Term 2016/17

• Project seminar: Projektseminar: Entwicklung einer Rapid Prototyping Oberfläche zum Trainieren und Testen Neuronaler Netze [106268]
  (in cooperation with Xiaoyi Jiang)

Summer Term 2016

• Lecture: Informatik II - Datenstrukturen und Algorithmen [104160]
  (in cooperation with Klaus Hinrichs)
• Project seminar: Projektseminar: IEEE SciVis Contest 2016 [104167]
  (in cooperation with Xiaoyi Jiang, Tobias Brix, Claas Flint and Klaus Hinrichs)
• Practice: Übungen zur Informatik II - Datenstrukturen und Algorithmen [104161]
  (in cooperation with Klaus Hinrichs)

Summer Term 2015

• Lecture/Practical: Einführung in die Computergrafik [101350]
  (in cooperation with Dimitar Valkov)
• Project seminar: Projektseminar: IEEE SciVis Contest 2015 [101311]
  (in cooperation with Tobias Brix and Klaus Hinrichs)

2021

• Drees, D, Scherzinger, A, Hägerling, R, Kiefer, F, and Jiang, X. 2021. “Scalable robust graph and feature extraction for arbitrary vessel networks in large volumetric datasets.” BMC Bioinformatics 22 (1) 346. doi: 10.1186/s12859-021-04262-w.

2019

• Drees, D, Scherzinger, A, and Jiang, X. 2019. “GERoMe – a method for evaluating stability of graph extraction algorithms without ground truth.” IEEE Access 7: 21744–21755. doi: 10.1109/ACCESS.2019.2898754.

2018

• Berh, D, Scherzinger, A, Otto, N, Jiang, X, Klämbt, C, and Risse, B. 2018. “Automatic non-invasive heartbeat quantification of Drosophila pupae.” Computers in Biology and Medicine 93: 189–199.
• Scherzinger, Aaron. 2018. “Data Exploration in Natural Sciences using Machine Learning and Scientific Visualization.” Dissertation thesis, Universität Münster.
• Klemm, S, Scherzinger, A, Drees, D, and Jiang, X. 2018. Barista - a graphical tool for designing and training deep neural networks arXiv e-print:1802.04626: CoRR.
• Dierkes, C, Scherzinger, A, and Kiefer, F. 2018. “Three-Dimensional Visualization of the Lymphatic Vasculature.” in Lymphangiogenesis - Methods and Protocols, Vol. 1846 of Methods in Molecular Biology, edited by G Oliver and ML Kahn. New York, NY: Springer. doi: 10.1007/978-1-4939-8712-2_1.
• Scherzinger, A, Hugenroth, P, Rüder, M, Bogdan, S, and Jiang, X. 2018. “Multi-class Cell Segmentation using CNNs with F1-measure Loss Function.” contribution to the Proc. of 40th German Conference on Pattern Recognition (GCPR), Stuttgart

2017

• Seifert, R, Scherzinger, A, Kiefer, F, Hermann, S, Jiang, X, and Schäfers, M. 2017. “Statistical permutation-based artery mapping (SPAM): A novel approach to evaluate imaging signals in the vessel wall.” BMC Medical Imaging 17 (1): 36:1–36:11..
• Bian, A, Scherzinger, A, and Jiang, X. 2017. “An enhanced multi-label random walk for biomedical image segmentation using statistical seed generation.” contribution to the Proc. of 18th Int. Confernce on Advanced Concepts for Intelligent Vision Systems (ACIVS), Antwerp, Belgium
• Hägerling, R, Drees, D, Scherzinger, A, Dierkes, C, Martin-Almedina, S, Butz, S, Gordon, K, Schäfers, M, Hinrichs, K, Ostergaard, P, Vestweber, D, Goerge, T, Mansour, S, Jiang, X, Mortimer, P, and Kiefer, F. 2017. “VIPAR, a quantitative approach to 3D-histopathology applied to lymphatic malformations.” JCI Insight 2 (16): e93424.
• Scherzinger, A, Klemm, S, Berh, D, and Jiang, X. 2017. “CNN-based background subtraction for long-term in-vial FIM imaging.” contribution to the Proc. of 17th Int. Conf. on Computer Analysis of Images and Patterns (CAIP), Ystad, Sweden
• Scherzinger, Aaron Brix Tobias, Drees, Dominik Völker Andreas, Radkov, Kiril Santalidis Niko, and Fieguth, Alexander Hinrichs Klaus H. 2017. “Interactive Exploration of Cosmological Dark-Matter Simulation Data.” IEEE Computer Graphics and Applications 37 (2): 80–89.
• Scherzinger, Aaron, Brix, Tobias, and Hinrichs, Klaus. 2017. “An Efficient Geometric Algorithm for Clipping and Capping Solid Triangle Meshes.” contribution to the 12th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2017) - Volume 1: GRAPP, Porto, Portugal , edited by Ana Paula Cláudio, Dominique Bechmann and BrazJose.
• Drees, D, Scherzinger, A, and Jiang, X. 2017. “GERoMe - A novel graph extraction robustness measure.” contribution to the Proc. of Int. Workshop on Graph-Based Representations in Pattern Recognition (GbR), Anacapri, Italy

2016

• Scherzinger, A, Kleene, F, Dierkes, C, Kiefer, F, Hinrichs, KH, and Jiang, X. 2016. “Automated Segmentation of Immunostained Cell Nuclei in 3D Ultramicroscopy Images.” in Vol. 9796 of Lecture Notes in Computer Science Springer.

2015

• Scherzinger, Aaron Brix Tobias, Drees, Dominik Völker Andreas, Radkov, Kiril Santalidis Niko, and Fieguth, Alexander Hinrichs Klaus H. 2015. “Visualize the Universe: Interactive Exploration of Cosmological Dark Matter Simulation Data.” contribution to the IEEE Visualization Conference 2015 October 25-30, Chicago, Il, USA Wiley-IEEE Press.
• Brix, Tobias, Scherzinger, Aaron, Völker, Andreas, and Hinrichs, Klaus. 2015. “Interactive Position-dependent Customization of Transfer Function Classification Parameters in Volume Rendering.” contribution to the Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2015, Chester, England
• Prätorius, Manuel, Scherzinger, Aaron, and Hinrichs, Klaus. 2015. “SKInteract: An on-body interaction system based on skin-texture recognition.” in Vol. 9299 of Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Springer. doi: 10.1007/978-3-319-22723-8_34.