PUBLICATIONS

  • 2019

    • Fuchs P, Rugen N, Carrie C, Elsässer M, Finkemeier I, Giese J, Hildebrandt TM, Kühn K, Maurino VG, Ruberti C, Schallenberg-Rüdinger M, Steinbeck J, Braun HP, Eubel H, Meyer EH, Müller-Schüssele SJ, Schwarzländer M (2019) Single organelle function and organization as estimated from Arabidopsis mitochondrial proteomics. Plant J. Epub ahead of print. doi: 10.1111/tpj.14534, recomended on plantsandpipettes
    • Niephaus E, Müller B, van Deenen N, Lassowskat I, Bonin M, Finkemeier I, Prüfer D, Schulze Gronover C (2019) Uncovering mechanisms of rubber biosynthesis in Taraxacum koksaghyz - role of cis-prenyltransferase-like 1 protein. Plant J. Epub ahead of print .doi: 10.1111/tpj.14471
    • Kim SY, Harvey CM, Giese J, Lassowskat I, Singh V, Cavanagh AP, Spalding MH, Finkemeier I, Ort DR, Huber SC (2019) In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site. Proc Natl Acad Sci U S A. 116(37):18723-18731. doi: 10.1073/pnas.1812916116
    • Seidel J, Meisinger T, Sindlinger J, Pieloch P, Finkemeier I, Schwarzer D (2019) Peptide-based 2-aminophenylamide probes for targeting endogenous class I HDAC complexes. Chembiochem. Epub ahead of print. doi: 10.1002/cbic.201900339
    • Uemura T, Nakano RT, Takagi J, Wang Y, Kramer K, Finkemeier I, Nakagami H, Tsuda K, Ueda T, Schulze-Lefert P, Nakano A (2019) A Golgi-released subpopulation of the trans-Golgi network mediates protein secretion in Arabidopsis. Plant Physiol. 179(2):519-532 doi: 10.1104/pp.18.01228.

  • 18

    • Birkenbihl RP, Kracher B, Ross A, Kramer K, Finkemeier I, Somssich IE (2018) Principles and characteristics of the Arabidopsis WRKY regulatory network during early MAMP-triggered immunity. Plant J. 96(3):487-502. doi:10.1111/tpj.14043.
    • Koskela MM*, Brünje A*, Ivanauskaite A, Grabsztunowicz M, Lassowskat I, Neumann U, Dinh TV, Sindlinger J, Schwarzer D, Wirtz M, Tyystjarvi E, Finkemeier I#, Mulo P# (2018) Chloroplast acetyltransferase NSI is required for state transitions in Arabidopsis thaliana.
      Plant Cell. doi:10.1105/tpc.18.00155. *co-first, #co-corresponding
    • Meng Q, Gupta R, Min CW, Kim J, Kramer K, Wang Y, Park SR, Finkemeier I, Kim ST (2018) A proteomic insight into the MSP1 and flg22 induced signaling in Oryza sativa leaves. J Proteomics. doi:10.1016/j.jprot.2018.04.015.
    • Wozny D, Kramer K, Finkemeier I, Acosta IF, Koornneef M (2018) Genes for seed longevity in barley identified by genomic analysis on Near Isogenic Lines. Plant Cell Environ. doi: 10.1111/pce.13330
    • Füßl M, Lassowskat I, Née G, Koskela MM, Brünje A, Tilak P, Giese J, Leister D, Mulo P, Schwarzer D, Finkemeier I (2018) Beyond histones: new substrate proteins of lysine deacetylases in Arabidopsis nuclei. Front Plant Sci. 9:461. doi: 10.3389/fpls.2018.00461
    • Gupta R, Min CW, Kramer K, Agrawal GK, Rakwal R, Park KH, Wang Y, Finkemeier I, Kim ST (2018) A multi-omics analysis of Glycine max leaves reveals alteration in flavonoid and isoflavonoid metabolism upon ethylene and abscisic acid treatment. Proteomics 18(7):e1700366. doi: 10.1002/pmic.201700366
    • Zhou H, Finkemeier I, Guan W, Tossounian MA, Wei B, Young D, Huang J, Messens J, Yang X, Zhu J, Wilson MH, Shen W, Xie Y, Foyer CH (2018) Oxidative stress-triggered interactions between the succinyl- and acetyl-proteomes of rice leaves. Plant Cell Environ. 41(5):1139-1153. doi: 10.1111/pce.13100
    • Finkemeier I, Schwarzländer M (2018) Mitochondrial regulation in the photosynthetic cell: principles and concepts. Annual Plant Reviews: Plant Mitochondria 2nd Edition, Chapter 7, Wiley. 185-226

  • 17

    • Lassowskat I, Hartl M, Hosp F, Boersema PJ, Mann M, Finkemeier I (2017) Dimethyl-Labeling-Based Quantification of the Lysine Acetylome and Proteome of Plants. Methods in Molecular Biology 1653:65-81, doi: 10.1007/978-1-4939-7225-8_5
    • Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I (2017) Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology 13, 949, doi: 10.15252/msb.20177819
    • Finkemeier I. (2017) Identification of the missing mitochondrial methyltransferase of citrate synthase. FEBS Lett. 591(12):1653-1656. doi: 10.1002/1873-3468.12692
    • Née G., Kramer K., Nakabayashi K., Yuan B., Xiang Y., Miatton E., Finkemeier I., Soppe Wim JJ (2017) DELAY OF GERMINATION1 requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy. Nature Communications 8, 72. doi: 10.1038/s41467-017-00113-6

  • 16

    • Rösler SM, Kramer K, Finkemeier I, Humpf HU, Tudzynski B (2016) The SAGA complex in the rice pathogen Fusarium fujikuroi: structure and functional characterization. Mol Microbiol. doi: 10.1111/mmi.13528
    • Hosp F, Lassowskat I, Santoro V, De Vleesschauwer D, Fliegner D, Redestig H, Mann M, Christian S, Hannah MA, Finkemeier I (2016) Lysine acetylation in mitochondria: From inventory to function. Mitochondrion. doi: 10.1016/j.mito.2016.07.012
    • Xiang Y, Song B, Née G, Kramer K, Finkemeier I, Soppe WJ (2016) Sequence Polymorphisms at the REDUCED DORMANCY5 Pseudophosphatase Underlie Natural Variation in Arabidopsis Dormancy. Plant Physiol. 171(4):2659-70.
    • Sindlinger J, Bierlmeier J, Geiger LC, Kramer K, Finkemeier I, Schwarzer D (2016) Probing the structure-activity relationship of endogenous histone deacetylase complexes with immobilized peptide-inhibitors. J Pept Sci. 22(5):352-9.
    • Ruhe J, Agler MT, Placzek A, Kramer K, Finkemeier I, Kemen EM (2016) Obligate Biotroph Pathogens of the Genus Albugo Are Better Adapted to Active Host Defense Compared to Niche Competitors. Front Plant Sci. Jun 20;7:820.
    • Dose A, Sindlinger J, Bierlmeier J, Bakirbas A, Schulze-Osthoff K, Einsele-Scholz S, Hartl M, Essmann F, Finkemeier I, Schwarzer D (2016) Interrogating Substrate Selectivity and Composition of Endogenous Histone Deacetylase Complexes with Chemical Probes. Angew Chem Int Ed Engl. 55(3):1192-5.

  • 15

    • Wagner S, Behera S, De Bortoli S, Logan DC, Fuchs P, Carraretto L, Teardo E, Cendron L, Nietzel T, Füßl M, Doccula FG, Navazio L, Fricker MD, Van Aken O, Finkemeier I, Meyer AJ, Szabò I, Costa A, Schwarzländer M (2015) The EF-Hand Ca2+ Binding Protein MICU Choreographs Mitochondrial Ca2+ Dynamics in Arabidopsis. Plant Cell 27(11):3190-212.
    • Hartl M, König AC, Finkemeier I (2015) Identification of lysine-acetylated mitochondrial proteins and their acetylation sites. Methods Mol Biol. 1305:107-21.
  • 14

    • El Zawily AM, Schwarzländer M, Finkemeier I, Johnston IG, Benamar A, Cao Y, Gissot C, Meyer AJ, Wilson K, Datla R, Macherel D, Jones NS, Logan DC (2014) FRIENDLY regulates mitochondrial distribution, fusion, and quality control in Arabidopsis. Plant Physiology 166(2):808-28.
    • König AC, Hartl M, Boersema PJ, Mann M, Finkemeier I (2014) The mitochondrial lysine acetylome of Arabidopsis. Mitochondrion. Volume 19, Part B: 252–260.
    • Schlicke H, Hartwig AS, Firtzlaff V, Richter AS, Glässer C, Maier K, Finkemeier I, Grimm B. Induced deactivation of genes encoding chlorophyll biosynthesis enzymes disentangles tetrapyrrole-mediated retrograde signaling. Mol Plant. 2014 7(7):1211-27.
    • Gläßer C, Haberer G, Finkemeier I, Pfannschmidt T, Kleine T, Leister D, Dietz KJ, Häusler RE, Grimm B, Mayer KF. Meta-analysis of retrograde signaling in Arabidopsis thaliana reveals a core module of genes embedded in complex cellular signaling networks. Mol Plant. 2014 7(7):1167-90.
    • Braun HP, Binder S, Brennicke A, Eubel H, Fernie AR, Finkemeier I, Klodmann J, König AC, Kühn K, Meyer E, Obata T, Schwarzländer M, Takenaka M, Zehrmann A (2014) The life of plant mitochondrial complex I. Mitochondrion. Volume 19, Part B:  295-313
    • König AC, Hartl M, Pham PA, Laxa M, Boersema P, Orwat A, Kalitventseva I, Plöchinger M, Braun HP, Leister D, Mann M, Wachter A, Fernie A, Finkemeier I (2014) The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. Plant Physiology 164(3):1401-1414
    • Schmidtmann E, König AC, Orwat A, Leister D, Hartl M, Finkemeier I (2014) Redox regulation of Arabidopsis mitochondrial citrate synthase. Molecular Plant 7(1):156-169
  • 13-11

    • Finkemeier I, Schwarzer D (2013) Lysin-Acetylierung: eine altbekannte Proteinmodifikation in neuem Licht. BIOspektrum 19 (7): 810-812
    • Finkemeier I, König AC, Heard W, Nunes Nesi A, Pham PA, Leister D, Fernie AR, Sweetlove LJ (2013) Transcriptomic analysis of the role of carboxylic acids in metabolite signaling in Arabidopsis leaves. Plant Physiology, 162(1):239-253
    • Schwarzländer M, Finkemeier I (2013) Mitochondrial energy and redox signaling in plants, Antioxidants and Redox Signaling, 18(16):2122-2144
    • Hartl M, Finkemeier I (2012) Plant mitochondrial retrograde signalling: post-translational modifications enter the stage. Frontiers in Plant Sciences 3:253
    • Schwarzländer M, König AC, Sweetlove LJ, Finkemeier I (2012) The impact of impaired mitochondrial function on retrograde signalling: a meta-analysis of transcriptomic responses. Journal of Experimental Botany, 63(4):1735-1750
    • Finkemeier I, Laxa M, Miguet L, Howden AJM, Sweetlove L (2011) Proteins of diverse function and subcellular location are lysine-acetylated in Arabidopsis. Plant Physiology, 155(4):1779-1790
  • 10 - 06

    • Finkemeier I, Leister D (2010) Plant chloroplasts and other plastids (version 2.0). Encyclopedia of Life Sciences
    • Finkemeier I, Sweetlove LJ (2009) The role of malate in plant homeostasis. F1000 Biology Reports 1: 47
    • Morgan MJ, Lehmann M, Schwarzländer M, Baxter CJ, Sienkiewicz-Porzucek A, Williams TC, Schauer N, Fernie AR, Fricker MD, Ratcliffe RG, Sweetlove LJ, Finkemeier I (2008) Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic Acid cycle flux and mitochondrial redox homeostasis. Plant Physiology 147(1):101-114
    • Romero-Puertas MC, Laxa M, Mattè A, Zaninotto F, Finkemeier I, Jones AM, Perazzolli M, Vandelle E, Dietz KJ, Delledonne M (2008) S-Nitrosylation of Peroxiredoxin II E Promotes Peroxynitrite-Mediated Tyrosine Nitration. Plant Cell 19, 4120-4130
    • Barranco-Medina S, Krell T, Finkemeier I, Sevilla F, Lázaro JJ, Dietz KJ (2007) Biochemical and molecular characterization of the mitochondrial peroxiredoxin PsPrxII F from Pisum sativum. Plant Physiology and Biochemistry 45 (10-11): 729-739
    • Gama F, Keech O, Eymery F, Finkemeier I, Gardeström P, Dietz KJ, Rey P, Jacquot JP, Rouhier N (2007) The mitochondrial type II peroxiredoxin from poplar. Physiologia Plantarum 129, 196-206
    • Finkemeier I, Sweetlove LJ (2006) Signalling in primary metabolism. New Phytologist 171(3), 445-447
    • Dietz KJ, Jacob S, Oelze ML, Laxa M, Tognetti V, de Miranda SM, Baier M, Finkemeier I (2006) The function of peroxiredoxins in plant organelle redox metabolism. Journal of Experimental Botany 57(8), 1697-1709
    • Lamkemeyer P, Laxa M, Collin V, Li W, Finkemeier I, Schottler MA, Holtkamp V, Tognetti VB, Issakidis-Bourguet E, Kandlbinder A, Weis E, Miginiac-Maslow M, Dietz KJ (2006) Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis. The Plant Journal 45(6):968-981
    • Groten K, Dutilleul C, van Heerden PD, Vanacker H, Bernard S, Finkemeier I, Dietz KJ, Foyer CH (2006) Redox regulation of peroxiredoxin and proteinases by ascorbate and thiols during pea root nodule senescence. FEBS Letters 580(5):1269-1276
  • 05 - 03

    • Rouhier N, Villarejo A, Srivastava M, Gelhaye E, Keech O, Droux, Finkemeier I, Samuelsson G, Dietz KJ, Jacquot JP, Wingsle G (2005) Identification of plant glutaredoxin targets. Antioxidants and Redox Signaling 7, 919-929
    • Finkemeier I, Goodman M, Lamkemeyer P, Kandlbinder A, Sweetlove LJ, Dietz KJ (2005) The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress. Journal of Biological Chemistry 280(13),12168-12180
    • Dietz KJ, Stork T, Finkemeier I, Lamkemeyer P, Li WX, El-Tayeb MA, Michel KP, Baier M, Pistorius E (2005) The role of peroxiredoxins in oxygenic photosynthesis of cyanobacteria and higher plants: peroxide detoxification or redox sensing? In: Photoprotection, photoinhibition, gene regulation, and environment. Demmig-Adams B, Adams W, Mattoo A, eds. Kluwer Acad Press
    • Dietz KJ, Lamkemeyer P, Finkemeier I, Li W-X, Kahmann U, Stork T, Baier M (2005) The function of chloroplast peroxiredoxins in peroxide detoxification and redox signalling in context of photosynthesis. Proceedings of the International Congress of Photosynthesis. van der Est A, Bruce D, eds., Montreal, Canada
    • Kandlbinder A, Finkemeier I, Wormuth D, Hanitzsch M, Dietz KJ (2004) The antioxidant status of photosynthesising leaves under nutrient deficiency: redox regulation, gene expression and antioxidant activity in Arabidopsis thaliana. Physiologia Plantarum, Special Issue on Redox Regulation 120, 63-73
    • Sharma S, Kaul S, Metwally A, Goyal K, Finkemeier I, Dietz KJ (2004) Cd phytotoxicity to barley (Hordeum vulgare) as affected by varying Fe nutritional status. Plant Science 166(5), 1287-1295
    • Horling F, Lamkemeyer P, König J, Finkemeier I, Baier M, Kandlbinder A, Dietz KJ (2003) Divergent light-, ascorbate- and oxidative stress-dependent regulation of expression of the peroxiredoxin gene family in Arabidopsis thaliana. Plant Physiology 131, 317-325
    • Metwally A, Finkemeier I, Georgi M, Dietz KJ (2003) Salicylic acid alleviates the cadmium toxicity in barley (Hordeum vulgare) seedlings. Plant Physiology 132, 272-281
    • Finkemeier I, Kluge C, Metwally A, Georgi M, Grotjohann N, Dietz KJ (2003) Alterations in Cd-induced gene expression under nitrogen deficiency in Hordeum vulgare. Plant, Cell and Environment 26, 821-833