Publikationen
- Schiller, Katharina, Janshoff, Saskia, Zenker, Sanja, Viehöver, Prisca, Hartwell, James, Eirich, Jürgen, Finkemeier, Iris, und Bräutigam, Andrea. . „Regulation of Crassulacean acid metabolism at the protein level in Kalanchoë laxiflora.“ Plant Physiology 197 (4). doi: 10.1093/plphys/kiaf095.
- Eirich, Jürgen, Née, Guillaume, Krüger, Thorben, Gasper, Michael, Drotleff, Julia, Romera-Branchat, Maida, Gehring, Elena, Brandt, Dennis, Bell, Christopher, Kramer, Katharina, Soppe, Wim, Sodenkamp, Johanna, Finkemeier, Iris, und Ahloumessou, Florian. . „DOG1 controls dormancy independently from ABA core signaling kinases regulation by preventing AFP dephosphorylation through AHG1.“ Science advances 11 (9). doi: 10.1126/sciadv.adr8502.
- Seidel, Julian, Schönfeld, Caroline, Sindlinger, Julia, Eirich, Jürgen, Kirchgäßner, Sören, Kreienkamp, Nina, Schulze‐Osthoff, Klaus, Finkemeier, Iris, Hailfinger, Stephan, und Schwarzer, Dirk. . „Interactome Profiling of a Lysine Deacetylase Trapping Probe Library Uncovers Crosstalk Between HDAC6 and NF‐κB Signaling.“ Angewandte Chemie International Edition 2025 (e202510967). doi: 10.1002/anie.202510967.
- Seidel, Julian, Schönfeld, Caroline, Sindlinger, Julia, Eirich, Jürgen, Kirchgäßner, Sören, Kreienkamp, Nina, Schulze‐Osthoff, Klaus, Finkemeier, Iris, Hailfinger, Stephan, und Schwarzer, Dirk. . „Interaktomanalyse einer Lysindeacetylase‐Sondenbibliothek deckt Wechselwirkung zwischen HDAC6 und dem NF‐κB‐Signalweg auf.“ Angewandte Chemie 2025 (e202510967 ). doi: 10.1002/ange.202510967.
- Brandt, Benjamin, Schwartz, Sebastian, Schwenkert, Serena, Krämer, Moritz, Om, Kuenzang, Engstler, Carina, Klingl, Andreas, Jahns, Peter, Eirich, Jürgen, Finkemeier, Iris, Cousins, Benjamin Asaph, und Kunz, Hans-Henning. . „Plant cells tolerate high rates of organellar mistranslation.“ Preprint. biorxiv.org doi: 10.1101/2025.03.07.642005.
- Köster, P, He, G, Liu, C, Dong, Q, Hake, K, Schmitz-Thom, I, Heinkow, P, Eirich, J, Wallrad, L, Hashimoto, K, Schültke, S, Finkemeier, I, Romeis, T, und Kudla, J. . „A bi-kinase module sensitizes and potentiates plant immune signaling.“ Science advances 11 (4): eadt9804–eadt9804. doi: 10.1126/sciadv.adt9804.
- Baur, Moritz, Schulz, Nora KE, Greune, Lilo, Länger, Zoe M, Eirich, Jürgen, Finkemeier, Iris, Peuss, Robert, Dersch, Petra, und Kurtz, Joachim. . „Immune priming in the insect gut: a dynamic response revealed by ultrastructural and transcriptomic changes.“ BMC Biology 23. doi: 10.1186/s12915-025-02334-4.
- Schiller, Katharina, Janshoff, Saskia, Zenker, Sanja, Viehöver, Prisca, Hartwell, James, Eirich, Jürgen, Finkemeier, Iris, und Bräutigam, Andrea. . „Regulation of Crassulacean Acid Metabolism at the protein level in the CAM plant Kalanchoë laxiflora.“ Preprint. biorxiv.org doi: 10.1101/2024.10.25.620298.
- Wolters, SM, Laibach, N, Riekötter, J, Roelfs, KU, Müller, B, Eirich, J, Twyman, RM, Finkemeier, I, Prüfer, D, und Schulze, Gronover C. . „The interaction networks of small rubber particle proteins in the latex of <i>Taraxacum koksaghyz</i> reveal diverse functions in stress responses and secondary metabolism.“ Frontiers in Plant Science 15: 1498737–1498737. doi: 10.3389/fpls.2024.1498737.
- Balcke, Gerd Ulrich, Vahabi, Khabat, Giese, Jonas, Finkemeier, Iris, und Tissier, Alain. . „Coordinated metabolic adaptation of Arabidopsis thaliana to high light.“ The Plant journal n/a. doi: 10.1111/tpj.16992 .
- Armbruster, Laura, Pożoga, Marlena, Wu, Zhongshou, Eirich, Jürgen, Devendrakumar, Thulasi Karen, Torre, LaDe Carolina, Miklánková, Pavlina, Huber, Monika, Bradic, Fabian, Poschet, Gernot, Weidenhausen, Jonas, Merker, Sabine, Ruppert, Thomas, Sticht, Carsten, Sinning, Irmgard, Finkemeier, Iris, Li, Xin, Hell, Rüdiger, und Wirtz, Markus. . „Nα-acetyltransferase NAA50 mediates plant immunity independent of the Nα-acetyltransferase A complex.“ Plant Physiology 2024. doi: 10.1093/plphys/kiae200.
- Arimura, Shin-Ichi, Finkemeier, Iris, Kühn, Kristina, und Takenaka, Mizuki. . „Multilayered Regulation of Plastids and Mitochondria.“ Plant and Cell Physiology 64 (4): 473–476. doi: 10.1093/pcp/pcae036.
- Vogelsang, Lara, Eirich, Jürgen, Finkemeier, Iris, und Dietz, Karl-Josef. . „Specificity and dynamics of H2O2 detoxification by the cytosolic redox regulatory network as revealed by in vitro reconstitution.“ Redox Biology 2024. doi: 10.1016/j.redox.2024.103141.
- Cosse, Maike, Rehders, Tanja, Eirich, Juergen, Finkemeier, Iris, und Selinski, Jennifer. . „Cysteine oxidation as a regulatory mechanism of Arabidopsis plastidial NAD-dependent malate dehydrogenase.“ Physiologia Plantarum 176 (3). doi: 10.1111/ppl.14340.
- Vogelsang, L., Eirich, J., Finkemeier, I., und Dietz, K.-J. . „Thiol Redox Proteomics for Identifying Redox-Sensitive Cysteine Residues Within the Protein of Interest During Stress.“ Methods in Molecular Biology 2832: 99–113. doi: 10.1007/978-1-0716-3973-3_7.
- Eirich, Jürgen, Boyer, Jean-Baptiste, Armbruster, Laura, Ivanauskaite, Aiste, Torre La De, Carolina, Meinnel, Thierry, Wirtz, Markus, Mulo, Paula, Finkemeier, Iris, und Giglione, Carmela. . „Light Changes Promote Distinct Responses of Plastid Protein Acetylation Marks.“ Molecular and Cellular Proteomics 23 (11) 100845. doi: 10.1016/j.mcpro.2024.100845.
- Brünje, Annika, Füßl, Magdalena, Eirich, Jürgen, Boyer, Jean-Baptiste, Heinkow, Paulina, Neumann, Ulla, Konert, Minna, Ivanauskaite, Aiste, Seidel, Julian, Ozawa, Shin-Ichiro, Sakamoto, Wataru, Meinnel, Thierry, Schwarzer, Dirk, Mulo, Paula, Giglione, Carmela, und Finkemeier, Iris. . „The plastidial protein acetyltransferase GNAT1 forms a complex with GNAT2, yet their interaction is dispensable for state transitions.“ Molecular and Cellular Proteomics 23 (11) 100850. doi: 10.1016/j.mcpro.2024.100850.
- Knodel, Franziska, Eirich, Jürgen, Pinter, Sabine, Eisler, Stephan A., Finkemeier, Iris, und Rathert, Philipp. . „The kinase NEK6 positively regulates LSD1 activity and accumulation in local chromatin sub-compartments.“ Communications biology 7 (1) 1483. doi: 10.1038/s42003-024-07199-x.
- Wolters, Silva Melissa, Laibach, Natalie, Riekötter, Jenny, Roelfs, Kai-Uwe, Müller, Boje, Eirich, Jürgen, Twyman, Richard M., Finkemeier, Iris, Prüfer, Dirk, und Schulze Gronover, Christan. . „The interaction networks of small rubber particle proteins in the latex of Taraxacum koksaghyz reveal diverse functions in stress responses and secondary metabolism.“ Frontiers in Plant Science 15 1498737. doi: 10.3389/fpls.2024.1498737.
- Giese, Jonas Eirich Jürgen, Walther, Dirk Zhang Youjun, Lassowskat, Ines Fernie R. Alisdair, Elsässer, Marlene Maurino G. Veronica, und Schwarzländer, Markus Finkemeier Iris. . „The interplay of post‐translational protein modifications in Arabidopsis leaves during photosynthesis induction.“ The Plant journal 116 (4): 1172–1193. doi: 10.1111/tpj.16406.
- Hartmann, Philipp, Bohdan, Kostiantyn, Hommrich, Moritz, Juliá, Fabio, Vogelsang, Lara, Eirich, Jürgen, Zangl, Rene, Farès, Christophe, Jacobs, Beatrice Julia, Mukhopadhyay, Dwaipayan, Mengeler, Marie Johanna, Vetere, Alessandro, Sterling, Sophie Marie, Hinrichs, Heike, Becker, Stefan, Morgner, Nina, Schrader, Wolfgang, Finkemeier, Iris, Dietz, Karl-Josef, Griesinger, Christian, und Ritter, Tobias. . „Chemoselective umpolung of thiols to episulfoniums for cysteine bioconjugation.“ Nature Chemistry 2023. doi: 10.1038/s41557-023-01388-7.
- Keller, JM, Frieboes, MJ, Jödecke, L, Kappel, S, Wulff, N, Rindfleisch, T, Sandoval-Ibanez, O, Gerlach, I, Thiele, W, Bock, R, Eirich, J, Finkemeier, I, Schünemann, D, Zoschke, R, Schöttler, MA, und Armbruster, U. . „Eukaryote-specific assembly factor DEAP2 mediates an early step of photosystem II assembly in Arabidopsis.“ Plant Physiology 2023. doi: 10.1093/plphys/kiad446.
- Ivanauskaite, A., Rantala, M., Laihonen, L., Konert, M., Schwenner, N., Mühlenbeck, J., Finkemeier, I., und Mulo, P. . „Loss of Chloroplast GNAT Acetyltransferases Results in Distinct Metabolic Phenotypes in Arabidopsis.“ Plant and Cell Physiology 64 (5): 549–563. doi: 10.1093/pcp/pcad017.
- Eirich, J., Köhl, K., Jahns, P., Finkemeier, I., Armbruster, U., Kramer, D.M., von Bismarck, T., Korkmaz, K., Ruß, J., Skurk, K., Kaiser, E., Correa, Galvis V., Cruz, J.A., und Strand, D.D. . „Light acclimation interacts with thylakoid ion transport to govern the dynamics of photosynthesis in Arabidopsis.“ New Phytologist 237 (1): 160–176. doi: 10.1111/nph.18534.
- Eirich, J., Sindlinger, J., Schön, S., Schwarzer, D., und Finkemeier, I. . „Peptide CoA conjugates for in situ proteomics profiling of acetyltransferase activities.“ Methods in Enzymology 684: 209–252. doi: 10.1016/bs.mie.2022.09.005.
- Tilak, P., Kotnik, F., Née, G., Seidel, J., Sindlinger, J., Heinkow, P., Eirich, J., Schwarzer, D., und Finkemeier, I. . „Proteome-wide lysine acetylation profiling to investigate the involvement of histone deacetylase HDA5 in the salt stress response of Arabidopsis leaves.“ The Plant journal 115 (1): 275–292. doi: 10.1111/tpj.16206.
- Bismarck, von Thekla, Korkmaz, Kübra, Ruß, Jeremy, Skurk, Kira, Kaiser, Elias, Galvis, Correa Viviana, Cruz, A.Jeffrey, Strand, D.Deserah, Köhl, Karin, Eirich, Jürgen, Finkemeier, Iris, Jahns, Peter, Kramer, M.David, und Armbruster, Ute. . „Light acclimation interacts with thylakoid ion transport to govern the dynamics of photosynthesis in Arabidopsis.“ New Phytologist 2022. doi: 10.1111/nph.18534.
- Jethva, Jay, Lichtenauer, Sophie, Schmidt-Schippers, Romy, Steffen-Heins, Anja, Poschet, Gernot, Wirtz, Markus, van Dongen, Joost T., Eirich, Juergen, Finkemeier, Iris, Bilger, Wolfgang, Schwarzländer, Markus, und Sauter, Margret. . „Mitochondrial alternative NADH dehydrogenases NDA1 and NDA2 promote survival of reoxygenation stress in Arabidopsis by safeguarding photosynthesis and limiting ROS generation.“ New Phytologist 238 (1). doi: 10.1111/nph.18657.
- Länger, Marie Zoe, Baur, Moritz, Korša, Ana, Eirich, Jürgen, Lindeza, Sofia Ana, Zanchi, Caroline, Finkemeier, Iris, und Kurtz, Joachim. . „Differential proteome profiling of bacterial culture supernatants reveals candidates for the induction of oral immune priming in the red flour beetle.“ Biology Letters 19 (11). doi: 10.1098/rsbl.2023.0322.
- Sinha, Neha, Eirich, Jürgen, Finkemeier, Iris, und Grimm, Bernhard. . „Glutamate 1-semialdehyde aminotransferase is connected to GluTR by GluTR-binding protein and contributes to the rate-limiting step of 5-aminolevulinic acid synthesis.“ The Plant cell 34. doi: 10.1093/plcell/koac237.
- Giese, J, Eirich, J, Post, F, Schwarzländer, M, und Finkemeier, I. . „Mass Spectrometry-Based Quantitative Cysteine Redox Proteome Profiling of Isolated Mitochondria Using Differential iodoTMT Labeling.“ Methods in Molecular Biology 2363: 215–234. doi: 10.1007/978-1-0716-1653-6_16.
- Linnenbrügger, L; Doering, L; Lansing, H; Fischer, K; Eirich, J; Finkemeier, I; von Schaewen, A. . „Alternative splicing of Arabidopsis G6PD5 recruits NADPH-producing OPPP reactions to the endoplasmic reticulum.“ Frontiers in Plant Science 13 909624. doi: 10.3389/fpls.2022.909624.
- Dr., Julia Sindlinger, Stefan, Schön, Dr., Jürgen Eirich, Dr., Sören Kirchgäßner, Prof. Dr., Iris Finkemeier, und Prof. Dr., Dirk Schwarzer. . „Investigating Peptide‐Coenzyme A Conjugates as Chemical Probes for Proteomic Profiling of N‐Terminal and Lysine Acetyltransferases.“ ChemBioChem 23. doi: 10.1002/cbic.202200255.
- Balparda, M, Elsässer, M, Badia, MB, Giese, J, Bovdilova, A, Hüdig, M, Reinmuth, L, Eirich, J, Schwarzländer, M, Finkemeier, I, Schallenberg-Rüdinger, M, und Maurino, VG. . „Acetylation of conserved lysines fine-tunes mitochondrial malate dehydrogenase activity in land plants.“ The Plant journal 109 (1): 92–111. doi: 10.1111/tpj.15556.
- Lynch, T., Née, G., Chu, A., Krüger, T., Finkemeier, I., und Finkelstein, R.R. . „ABI5 binding protein2 inhibits ABA responses during germination without ABA-INSENSITIVE5 degradation.“ Plant Physiology 189 (2): 666–678. doi: 10.1093/plphys/kiac096.
- Leister, D., Kramer, K., Finkemeier, I., Nickelsen, J., Füßl, M., König, A.C., Eirich, J., Hartl, M., Kleinknecht, L., Bohne, A.V., und Harzen, A. . „Dynamic light- and acetate-dependent regulation of the proteome and lysine acetylome of Chlamydomonas.“ The Plant journal 109 (1): 261–277. doi: 10.1111/tpj.15555.
- Van Breusegem, F., Meinnel, T., Willems, P., Huesgen, P.F., Finkemeier, I., und Graciet, E. . „Editorial: Plant protein termini: Their generation, modification and function.“ Frontiers in Plant Science 13. doi: 10.3389/fpls.2022.1040392.
- Sinha, N., Eirich, J., Finkemeier, I., und Grimm, B. . „Glutamate 1-semialdehyde aminotransferase is connected to GluTR by GluTR-binding protein and contributes to the rate-limiting step of 5-aminolevulinic acid synthesis.“ The Plant cell 34 (11): 4623–4640. doi: 10.1093/plcell/koac237.
- Sindlinger, J., Schön, S., Eirich, J., Kirchgäßner, S., Finkemeier, I., und Schwarzer, D. . „Investigating Peptide-Coenzyme A Conjugates as Chemical Probes for Proteomic Profiling of N-Terminal and Lysine Acetyltransferases.“ ChemBioChem 23 (17). doi: 10.1002/cbic.202200255.
- Nickelsen, J., Bohne, A.V., Neusius, D., Kleinknecht, L., Teh, J.T., Ostermeier, M., Kelterborn, S., Eirich, J., Hegemann, P., und Finkemeier, I. . „Lysine acetylation regulates moonlighting activity of the E2 subunit of the chloroplast pyruvate dehydrogenase complex in Chlamydomonas.“ The Plant journal 111 (6): 1780–1800. doi: 10.1111/tpj.15924.
- Giese, J., Eirich, J., Post, F., Schwarzländer, M., und Finkemeier, I. . „Mass Spectrometry–Based Quantitative Cysteine Redox Proteome Profiling of Isolated Mitochondria Using Differential iodoTMT Labeling.“ Methods in Molecular Biology 2363: 215–234.. doi: 10.1007/978-1-0716-1653-6_16.
- Füßl, Magdalena, König, Ann-Christine, Eirich, Jürgen, Hartl, Markus, Kleinknecht, Laura, Bohne, Alexandra-Viola, Harzen, Anne, Kramer, Katharina, Leister, Dario, Nickelsen, Jörg, und Finkemeier, Iris. . „Dynamic light‐ and acetate‐dependent regulation of the proteome and lysine acetylome of Chlamydomonas.“ The Plant journal 109 (1): 261–277. doi: 10.1111/tpj.15555.
- Neusius, D., Kleinknecht, L., Teh, J.T., Ostermeier, M., Kelterborn, S., Eirich, J., Hegemann, P., Finkemeier, I., Bohne, A.V., und Nickelsen, J. . „Lysine acetylation regulates moonlighting activity of the E2 subunit of the chloroplast pyruvate dehydrogenase complex in Chlamydomonas.“ The Plant journal 111 (6): 1780–1800. doi: 10.1111/tpj.15924.
- Zhou, H., Zhang, F., Zhai, F., Su, Y., Zhou, Y., Ge, Z., Tilak, P., Eirich, J., Finkemeier, I., Fu, L., Li, Z., Yang, J., Shen, W., Yuan, X., und Xie, Y. . „Rice GLUTATHIONE PEROXIDASE1-mediated oxidation of bZIP68 positively regulates ABA-independent osmotic stress signaling.“ Molecular Plant 15 (4): 651–670. doi: 10.1016/j.molp.2021.11.006.
- Uflewski, M, Mielke, S, Corre, GV, vo, BT, Chen, X, Tietz, E, Ruß, J, Luzarowski, M, Sokolowska, E, Skirycz, A, Eirich, J, Finkemeier, I, Schöttler, MA, und Armbruster, U. . „Functional characterization of protonantiport regulation in the thylakoid membrane.“ Plant Physiology 187. doi: 10.1093/plphys/kiab135.
- Eirich, J., Skirycz, A., Schöttler, M.A., Finkemeier, I., Armbruster, U., Uflewski, M., Mielke, S., Galvis, V.C., von Bismarck, T., Chen, X., Tietz, E., Ruß, J., Luzarowski, M., und Sokolowska, E. . „Functional characterization of proton antiport regulation in the thylakoid membrane.“ Plant Physiology 187 (4): 2209–2229. doi: 10.1093/plphys/kiab135.
- Blanvillain-Baufumé, S., Rzemieniewski, J., Bautor, J., Harzen, A., Menke, F.L.H., Derbyshire, P., Nakagami, H., Finkemeier, I., Parker, J.E., Jones, J.D.G., Sun, X., Lapin, D., Feehan, J.M., Stolze, S.C., Kramer, K., und Dongus, J.A. . „Pathogen effector recognition-dependent association of NRG1 with EDS1 and SAG101 in TNL receptor immunity.“ Nature Communications 12 (1). doi: 10.1038/s41467-021-23614-x.
- Rugen, N., Schaarschmidt, F., Eirich, J., Finkemeier, I., Braun, H.P., und Eubel, H. . „Protein interaction patterns in Arabidopsis thaliana leaf mitochondria change in dependence to light.“ BBA - Bioenergetics 1862 (8). doi: 10.1016/j.bbabio.2021.148443.
- Rose, J., Müller, B., Groscurth, S., Giese, J., Eirich, J., Finkemeier, I., Twyman, R.M., Prüfer, D., und Noll, G.A. . „The functionality of plant mechanoproteins (forisomes) is dependent on the dual role of conserved cysteine residues.“ International Journal of Biological Macromolecules 193: 1332–1339. doi: 10.1016/j.ijbiomac.2021.10.192.
- Ramundo, S., Mühlenbeck, J.S., Finkemeier, I., Nickelsen, J., Storchová, Z., Wirtz, M., Willmund, F., Räschle, M., Westrich, L.D., Gotsmann, V.L., Herkt, C., Ries, F., Kazek, T., Trösch, R., und Armbruster, L. . „The versatile interactome of chloroplast ribosomes revealed by affinity purification mass spectrometry.“ Nucleic Acids Research 49 (1): 400–415. doi: 10.1093/nar/gkaa1192.
- Stitt, M., Daloso, D.M., Fernie, A.R., Finkemeier, I., Zhang, Y., Giese, J., Kerbler, S.M., Siemiatkowska, B., Perez, de Souza L., Alpers, J., Medeiros, D.B., und Hincha, D.K. . „Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis.“ Molecular Plant 14 (7): 1104–1118. doi: 10.1016/j.molp.2021.03.023.
- Rugen, N., Schaarschmidt, F., Eirich, J., Finkemeier, I., Braun, H.P., und Eubel, H. . „Protein interaction patterns in Arabidopsis thaliana leaf mitochondria change in dependence to light.“ BBA - Bioenergetics 1862 (8). doi: 10.1016/j.bbabio.2021.148443.
- Rose, J., Müller, B., Groscurth, S., Giese, J., Eirich, J., Finkemeier, I., Twyman, R.M., Prüfer, D., und Noll, G.A. . „The functionality of plant mechanoproteins (forisomes) is dependent on the dual role of conserved cysteine residues.“ International Journal of Biological Macromolecules 193: 1332–1339. doi: 10.1016/j.ijbiomac.2021.10.192.
- Bienvenut, WV, Brünje, A, Boyer, J, Mühlenbeck, JS, Bernal, G, Lassowskat, I, Dian, C, Linster, E, Dinh, TV, Koskela, MM, Jung, V, Seidel, J, Schyrba, LK, Ivanauskaite, A, Eirich, J, Hell, R, Schwarzer, D, Mulo, P, Wirtz, M, Meinnel, T, Giglione, C, und Finkemeier, I. . „Dual lysine and N-terminal acetyltransferases reveal the complexity underpinning protein acetylation.“ Molecular Systems Biology 16 (7): e9464. doi: 10.15252/msb.20209464.
- Fuchs, P, Rugen, N, Carrie, C, Elsässer, M, Finkemeier, I, Giese, J, Hildebrandt, TM, Kühn, K, Maurino, VG, Ruberti, C, Schallenberg-Rüdinger, M, Steinbeck, J, Braun, HP, Eubel, H, Meyer, EH, Müller-Schüssele, SJ, und Schwarzländer, M. . „Single organelle function and organization as estimated from Arabidopsis mitochondrial proteomics.“ The Plant journal 1. doi: 10.1111/tpj.14534.
- Armbruster, L, Linster, E, Boyer, J, Brünje, A, Eirich, J, Stephan, I, Bienvenut, WV, Weidenhausen, J, Meinnel, T, Hell, R, Sinning, I, Finkemeier, I, Giglione, C, und Wirtz, M. . „NAA50 is an enzymatically active Nα-acetyltransferase that is crucial for development and regulation of stress responses.“ Plant Physiology 183 (4): 1502–1516. doi: 10.1104/pp.20.00222.
- Nietzel, T, Mostertz, J, Ruberti, C, Nee, G, Fuchs, P, Wagner, S, Moseler, A, Müller-Schüssele, SJ, Benamar, A, Poschet, G, Büttner, M, Møller, IM, Lillig, CH, Macherel, D, Wirtz, M, Hell, R, Finkemeier, I, Meyer, AJ, Hochgräfe, F, und Schwarzländer, M. . „Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.“ Proceedings of the National Academy of Sciences of the United States of America 117 (1): 741–751. doi: 10.1073/pnas.1910501117.
- von Korff, M., Simon, R., Walla, A., Wilma, van Esse G., Kirschner, G.K., Guo, G., Brünje, A., und Finkemeier, I. . „An Acyl-CoA N-Acyltransferase regulates meristem phase change and plant architecture in Barley.“ Plant Physiology 183 (3): 1088–1109. doi: 10.1104/pp.20.00087.
- Mulo, P., Koskela, M.M., Brünje, A., Ivanauskaite, A., Lopez, L.S., Schneider, D., DeTar, R.A., Kunz, H.H., und Finkemeier, I. . „Comparative analysis of thylakoid protein complexes in state transition mutants nsi and stn7: focus on PSI and LHCII.“ Photosynthesis Research 145 (1): 15–30. doi: 10.1007/s11120-020-00711-4.
- Tsuda, K., Nakagami, H., Nobori, T., Wang, Y., Wu, J., Stolze, S.C., Tsuda, Y., und Finkemeier, I. . „Multidimensional gene regulatory landscape of a bacterial pathogen in plants.“ Nature plants 6 (7): 883–896. doi: 10.1038/s41477-020-0690-7.
- Sinning, I., Hell, R., Giglione, C., Finkemeier, I., Wirtz, M., Armbruster, L., Linster, E., Boyer, J.B., Brünje, A., Eirich, J., Stephan, I., Bienvenut, W.V., Weidenhausen, J., und Meinnel, T. . „NAA50 is an enzymatically active Na-acetyltransferase that is crucial for development and regulation of stress responses1[OPEN].“ Plant Physiology 183 (4): 1502–1516. doi: 10.1104/pp.20.00222.
- Linster, E., Layer, D., Bienvenut, W.V., Dinh, T.V., Weyer, F.A., Leemhuis, W., Brünje, A., Hoffrichter, M., Miklankova, P., Kopp, J., Lapouge, K., Sindlinger, J., Schwarzer, D., Meinnel, T., Finkemeier, I., Giglione, C., Hell, R., Sinning, I., und Wirtz, M. . „The Arabidopsis Nα-acetyltransferase NAA60 locates to the plasma membrane and is vital for the high salt stress response.“ New Phytologist 228 (2): 554–569. doi: 10.1111/nph.16747.
- Bölter, B., Mitterreiter, M.J., Schwenkert, S., Finkemeier, I., und Kunz, H.H. . „The topology of plastid inner envelope potassium cation efflux antiporter KEA1 provides new insights into its regulatory features.“ Photosynthesis Research 145 (1): 43–54. doi: 10.1007/s11120-019-00700-2.
- Benninghaus, V.A.Van Deenen N. Müller B. Roelfs K.-U., Lassowskat, I., Finkemeier, I., Prüfer, D., und Gronover, C.S. . „Comparative proteome and metabolome analyses of latex-exuding and non-exuding Taraxacum koksaghyz roots provide insights into laticifer biology.“ Journal of Experimental Botany 71 (4): 1278–1293. doi: 10.1093/jxb/erz512.
- Giese, J., Lassowskat, I., und Finkemeier, I. . „High-Resolution Lysine Acetylome Profiling by Offline Fractionation and Immunoprecipitation.“ Methods in Molecular Biology 2139: 241–256. doi: 10.1007/978-1-0716-0528-8_18.
- Née, G., Tilak, P., und Finkemeier, I. . „A Versatile Workflow for the Identification of Protein–Protein Interactions Using GFP-Trap Beads and Mass Spectrometry-Based Label-Free Quantification.“ Methods in Molecular Biology 2139: 257–271. doi: 10.1007/978-1-0716-0528-8_19.
- Seidel, J., Meisinger, T., Sindlinger, J., Pieloch, P, und Finkemeier, I.Schwarzer D. . „Peptide-Based 2-Aminophenylamide Probes for Targeting Endogenous Class I Histone Deacetylase Complexes.“ ChemBioChem 20 (24): 3001–3005. doi: 10.1002/cbic.201900339.
- Niephaus, E., Müller, B., van Deenen, N., Lassowskat, I., Bonin, M., Finkemeier, I., Prüfer, D., und Schulze Gronover, C. . „Uncovering mechanisms of rubber biosynthesis in Taraxacum koksaghyz – role of cis-prenyltransferase-like 1 protein.“ The Plant journal 100 (3): 591–609. doi: 10.1111/tpj.14471.
- Kim, S.Y., Harvey, C.M., Giese, J., Lassowskat, I., Singh, S., Cavanagh, A., Spalding, M., Finkemeier, I., Ort, D.R., und Huber, S.C. . „In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site.“ Proceedings of the National Academy of Sciences of the United States of America 116 (37): 18723–18731. doi: 10.1073/pnas.1812916116.
- Meng, Q., Gupta, R., Min, C.W., Kim, J., Kramer, K., Wang, Y., Park, S.-R., Finkemeier, I., und Kim, S.T. . „A proteomic insight into the MSP1 and flg22 induced signaling in Oryza sativa leaves.“ Journal of Proteomics 196: 120–130. doi: 10.1016/j.jprot.2018.04.015.
- Uemura, T., Nakano, R.T., Takagi, J., Wang, Y., Kramer, K., Finkemeier, I., Nakagami, H., Tsuda, K., Ueda, T., Schulze-Lefert, P., und Nakano, A. . „A golgi-released subpopulation of the trans-golgi network mediates protein secretion in arabidopsis.“ Plant Physiology 179 (2): 519–532. doi: 10.1104/pp.18.01228.
- Zhou, H., Finkemeier, I., Guan, W., Tossounian, M., Wei, B., Young, D., Huang, J., Messens, J., Yang, X., Zhu, J., Wilson, M., Shen, W., Xie, Y., und Foyer, C. . „Oxidative stress-triggered interactions between the succinyl- and acetyl-proteomes of rice leaves.“ Plant, Cell and Environment 2018 (null). doi: 10.1111/pce.13100.
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- Meng, Q., Gupta, R., Min, C.W., Kim, J., Kramer, K., Wang, Y., Park, S.-R., Finkemeier, I., und Kim, S.T. . „Label-free quantitative proteome data associated with MSP1 and flg22 induced signaling in rice leaves.“ Data in Brief 20: 204–209. doi: 10.1016/j.dib.2018.07.063.
- Koskela, M.M., Brünje, A., Ivanauskaite, A., Grabsztunowicz, M., Lassowskat, I., Neumann, U., Dinh, T.V., Sindlinger, J., Schwarzer, D., Wirtz, M., Tyystjärvi, E., Finkemeier, I., und Mulo, P. . „Chloroplast acetyltransferase NSI is required for state transitions in arabidopsis Thaliana.“ The Plant cell 30 (8): 1695–1709. doi: 10.1105/tpc.18.00155.
- Wozny, D., Kramer, K., Finkemeier, I., Acosta, i.F., und Koornneef, M. . „Genes for seed longevity in barley identified by genomic analysis on near isogenic lines.“ Plant, Cell and Environment 41 (8): 1895–1911. doi: 10.1111/pce.13330.
- Füßl, M., Lassowskat, I., Née, G, Koskela, M.M., Brünje, A., Tilak, P., Giese, J., Leister, D., Mulo, P., Schwarzer, D., und Finkemeier, I. . „Beyond histones: New substrate proteins of lysine deacetylases in arabidopsis nuclei.“ Frontiers in Plant Science 9 461. doi: 10.3389/fpls.2018.00461.
- Gupta, R., Min, C.W., Kramer, K., Agrawal, G.K., Rakwal, R., Park, K.-H., Wang, Y., Finkemeier, I., und Kim, S.T. . „A Multi-Omics Analysis of Glycine max Leaves Reveals Alteration in Flavonoid and Isoflavonoid Metabolism Upon Ethylene and Abscisic Acid Treatment.“ Proteomics 18 (7) 1700366. doi: 10.1002/pmic.201700366.
- Hosp, F., Lassowskat, I., Santoro, V., De Vleesschauwer, D., Fliegner, D., Redestig, H., Mann, M., Christian, S., Hannah, M., und Finkemeier, I. . „Lysine acetylation in mitochondria: From inventory to function.“ Mitochondrion 33 (null): 58–71. doi: 10.1016/j.mito.2016.07.012.
- Hartl, M., Füßl, M., Boersema, P., Jost, J., Kramer, K., Bakirbas, A., Sindlinger, J., Plöchinger, M., Leister, D., Uhrig, G., Moorhead, G., Cox, J., Salvucci, M., Schwarzer, D., Mann, M., und Finkemeier, I. . „Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis.“ Molecular Systems Biology 13 (10). doi: 10.15252/msb.20177819.
- Finkemeier, I. . „Identification of the missing mitochondrial methyltransferase of citrate synthase.“ FEBS Letters 591 (12): 1653–1656. doi: 10.1002/1873-3468.12692.
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- Ruhe, J., Agler, M., Placzek, A., Kramer, K., Finkemeier, I., und Kemen, E. . „Obligate biotroph pathogens of the genus albugo are better adapted to active host defense compared to niche competitors.“ Frontiers in Plant Science 7 (null). doi: 10.3389/fpls.2016.00820.
- Xiang, Y., Song, B., Née, G., Kramer, K., Finkemeier, I., und Soppe, W. . „Sequence polymorphisms at the REDUCED DORMANCY5 pseudophosphatase underlie natural variation in Arabidopsis dormancy.“ Plant Physiology 171 (4): 2659–2670. doi: 10.1104/pp.16.00525.
- Sindlinger, J., Bierlmeier, J., Geiger, L., Kramer, K., Finkemeier, I., und Schwarzer, D. . „Probing the structure-activity relationship of endogenous histone deacetylase complexes with immobilized peptide-inhibitors.“ Journal of Peptide Science 22 (5): 352–359. doi: 10.1002/psc.2875.
- Rösler, S., Kramer, K., Finkemeier, I., Humpf, H., und Tudzynski, B. . „The SAGA complex in the rice pathogen Fusarium fujikuroi: structure and functional characterization.“ Molecular Microbiology 102 (6): 951–974. doi: 10.1111/mmi.13528.
- Dose, A., Sindlinger, J., Bierlmeier, J., Bakirbas, A., Schulze-Osthoff, K., Einsele-Scholz, S., Hartl, M., Essmann, F., Finkemeier, I., und Schwarzer, D. . „Interrogating substrate selectivity and composition of endogenous histone deacetylase complexes with chemical probes.“ Angewandte Chemie International Edition 55 (3): 1192–1195. doi: 10.1002/anie.201508174.
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- Gläßer, C., Haberer, G., Finkemeier, I., Pfannschmidt, T., Kleine, T., Leister, D., Dietz, K., Häusler, R., Grimm, B., und Mayer, K. . „Meta-analysis of retrograde signaling in Arabidopsis thaliana reveals a core module of genes embedded in complex cellular signaling networks.“ Molecular Plant 7 (7): 1167–1190. doi: 10.1093/mp/ssu042.
- Schlicke, H., Hartwig, A., Firtzlaff, V., Richter, A., Glässer, C., Maier, K., Finkemeier, I., und Grimm, B. . „Induced deactivation of genes encoding chlorophyll biosynthesis enzymes disentangles tetrapyrrole-mediated retrograde signaling.“ Molecular Plant 7 (7): 1211–1227. doi: 10.1093/mp/ssu034.
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- Braun, H., Binder, S., Brennicke, A., Eubel, H., Fernie, A., Finkemeier, I., Klodmann, J., König, A., Kühn, K., Meyer, E., Obata, T., Schwarzländer, M., Takenaka, M., und Zehrmann, A. . „The life of plant mitochondrial complex I.“ Mitochondrion 19 (null): 295–313. doi: 10.1016/j.mito.2014.02.006.
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- Finkemeier, I., König, A., Heard, W., Nunes-Nesi, A., Pham, P., Leister, D., Fernie, A., und Sweetlove, L. . „Transcriptomic analysis of the role of carboxylic acids in metabolite signaling in arabidopsis leaves.“ Plant Physiology 162 (1): 239–253. doi: 10.1104/pp.113.214114.
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- Schwarzländer, M., König, A., Sweetlove, L., und Finkemeier, I. . „The impact of impaired mitochondrial function on retrograde signalling: A meta-analysis of transcriptomic responses.“ Journal of Experimental Botany 63 (4): 1735–1750. doi: 10.1093/jxb/err374.
- Finkemeier, I., Laxa, M., Miguet, L., Howden, A., und Sweetlove, L. . „Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis.“ Plant Physiology 155 (4): 1779–1790. doi: 10.1104/pp.110.171595.
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- Finkemeier, I, und Sweetlove, LJ. . „The role of malate in plant homeostasis.“ F1000 Biology Reports I (47).
- Morgan, M., Lehmann, M., Schwarzländer, M., Baxter, C., Sienkiewicz-Porzucek, A., Williams, T., Schauer, N., Fernie, A., Fricker, M., Ratcliffe, R., Sweetlove, L., und Finkemeier, I. . „Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis.“ Plant Physiology 147 (1): 101–114. doi: 10.1104/pp.107.113613.
- Romero-Puertas, M., Laxa, M., Mattè, A., Zaninotto, F., Finkemeier, I., Jones, A., Perazzolli, M., Vandelle, E., Dietz, K., und Delledonne, M. . „S-nitrosylation of peroxiredoxin II E promotes peroxynitrite-mediated tyrosine nitration.“ The Plant cell 19 (12): 4120–4130. doi: 10.1105/tpc.107.055061.
- Barranco-Medina, S., Krell, T., Finkemeier, I., Sevilla, F., Lázaro, J., und Dietz, K. . „Biochemical and molecular characterization of the mitochondrial peroxiredoxin PsPrxII F from Pisum sativum.“ Plant Physiology and Biochemistry 45 (null): 729–739. doi: 10.1016/j.plaphy.2007.07.017.
- Gama, F., Keech, O., Eymery, F., Finkemeier, I., Gelhaye, E., Gardeström, P., Dietz, K., Rey, P., Jacquot, J., und Rouhier, N. . „The mitochondrial type II peroxiredoxin from poplar.“ Physiologia Plantarum 129 (1): 196–206. doi: 10.1111/j.1399-3054.2006.00785.x.
- Finkemeier, I., und Sweetlove, L. . „Signalling in primary metabolism.“ New Phytologist 171 (3): 445–447. doi: 10.1111/j.1469-8137.2006.01805.x.
- Groten, K., Dutilleul, C., Van Heerden, P., Vanacker, H., Bernard, S., Finkemeier, I., Dietz, K., und Foyer, C. . „Redox regulation of peroxiredoxin and proteinases by ascorbate and thiols during pea root nodule senescence.“ FEBS Letters 580 (5): 1269–1276. doi: 10.1016/j.febslet.2006.01.043.
- Lamkemeyer, P., Laxa, M., Collin, V., Li, W., Finkemeier, I., Schöttler, M., Holtkamp, V., Tognetti, V., Issakidis-Bourguet, E., Kandlbinder, A., Weis, E., Miginiac-Maslow, M., und Dietz, K. . „Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis.“ The Plant journal 45 (6): 968–981. doi: 10.1111/j.1365-313X.2006.02665.x.
- Dietz, K.-J, Stork, T, Finkemeier, I, Lamkemeyer, P, Li, W.X, El-Tayeb, MA, Michel, KP, Pistorius, E, und Baier, M. . „The Role of Peroxiredoxins in Oxygenic Photosynthesis of Cyanobacteria and Higher Plants: Peroxide Detoxification or Redox Sensing?“ In Photoprotection, photoinhibition, gene regulation, and environment, herausgegeben von B Demmig-Adams, W Adams und A Mattoo. Kluwer Academic.
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- Rouhier, N., Villarejo, A., Srivastava, M., Gelhaye, E., Keech, O., Droux, M., Finkemeier, I., Samuelsson, G., Dietz, K., Jacquot, J., und Wingsle, G. . „Identification of plant glutaredoxin targets.“ Antioxidants and Redox Signaling 7 (null): 919–929. doi: 10.1089/ars.2005.7.919.
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- Kandlbinder, A., Finkemeier, I., Wormuth, D., Hanitzsch, M., und Dietz, K. . „The antioxidant status of photosynthesizing leaves under nutrient deficiency: Redox regulation, gene expression and antioxidant activity in Arabidopsis thaliana.“ Physiologia Plantarum 120 (1): 63–73. doi: 10.1111/j.0031-9317.2004.0272.x.
- Sharma, S., Kaul, S., Metwally, A., Goyal, K., Finkemeier, I., und Dietz, K. . „Cadmium toxicity to barley (Hordeum vulgare) as affected by varying Fe nutritional status.“ Plant Science 166 (5): 1287–1295. doi: 10.1016/j.plantsci.2004.01.006.
- Metwally, A., Finkemeier, I., Georgi, M., und Dietz, K. . „Salicylic acid alleviates the cadmium toxicity in barley seedlings.“ Plant Physiology 132 (1): 272–281. doi: 10.1104/pp.102.018457.
- Horling, F., Lamkemeyer, P., König, J., Finkemeier, I., Kandlbinder, A., Baier, M., und Dietz, K. . „Divergent light-, ascorbate-, and oxidative stress-dependent regulation of expression of the peroxiredoxin gene family in Arabidopsis.“ Plant Physiology 131 (1): 317–325. doi: 10.1104/pp.010017.
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