GLYCO-LINKS


Web-resources related to the primary structure of carbohydrates

  1. IUPAC-IUBMB Nomenclature of Carbohydrates
    International Union of Pure and Applied Chemistry, International Union of Biochemistry and Molecular Biology
    www.chem.qmw.ac.uk/iupac/2carb/
  2. LINUCS LInear Notation for Unique description of Carbohydrate Structure
    www.dkfz-heidelberg.de/spec/linucs/
  3. CCSD - Complex Carbohydrate Structure Database (CarbBank)
    www.boc.chem.uu.nl/sugabase/databases.html
  4. SugaBase
    www.boc.chem.uu.nl/sugabase/databases.html
  5. SweetDB
    www.dkfz-heidelberg.de/spec2/sweetdb/
    links to PubMed, Subito, 3D-structure & Mass data
  6. GlycoBase of USTL
    glycobase.univ-lille1.fr/base/

Tools for the analysis of NMR and MS data

  1. ECDB - E. coli O-antigen database
    Structure and NMR data of E. coli LPS
    www.casper.organ.su.se/ECDB/
    links to PubMed, CarbBank, CCUG, ATCC
  2. SPECARB - Raman spectra of carbohydrates
    www.models.kvl.dk/users/engelsen/specarb/specarb.html
  3. CASPER - Computer Aided SPectrum Evaluation of Regular polysaccharides
    Simulation of NMR data
    www.casper.organ.su.se/casper/
  4. GlycoFragment
    Simulation of mass spectra
    www.dkfz-heidelberg.de/spec/projekte/fragments/

Conformation of carbohydrates and glycoproteins

  1. PDB - Protein Data Ban
    www.rcsb.org/pdb/
  2. Pdb2Linucs – Annotaded Protein Data Bank
    www.dkfz-heidelberg.de/spec/pdb2linucs/
  3. HIC-Up (Hetero-compound Information Centre – Uppsala)
    alpha2.bmc.uu.se/hicup/
  4. Image Library of Biological Macromolecules
    www.imb-jena.de/ImgLibPDB/pages/carb.html
  5. Het-PDB Navi
    daisy.bio.nagoya-u.ac.jp/golab/hetpdbnavi.html
  6. GlycoMaps Database – Conformational maps of disaccharides
    www.dkfz-heidelberg.de/spec/glycomaps/
  7. SWEET-II
    A program for constructing 3D models of saccharides from their sequences using standard nomenclature
    www.dkfz-heidelberg.de/spec/sweet2/
  8. Glydic
    A web tool for predicting n-glycan structures based on md-simulations with mm3 force field
    www.dkfz-heidelberg.de/spec/glydict/

Databases of Enzymes and Lectins

  1. CAZY - Carbohydrate Active enZYmes
    www.cazy.org/
    links to NiceZyme (ExPASy), Taxonomy Browser (NBCI), Entrez Nucleotide/Protein (NBCI), TrEMBL (ExPASy), PDB
  2. BPGD - Bacterial Polysaccharide Gene Database
    www.microbio.usyd.edu.au/BPGD/default.htm
  3. 3D Lectin Database
    www.cermav.cnrs.fr/lectines/
    links to Medline, PDB, HSSP, SCOP
  4. Torkild's Lectin Page
    plab.ku.dk/tcbh/lectin-links.htm

Databases and prediction tools related to glycoproteins

  1. O-GlycBas
    www.cbs.dtu.dk/databases/OGLYCBASE/
  2. FindMo
    www.expasy.org/tools/findmod/
  3. GlycoMod Tool/GlycanMas
    www.expasy.org/tools/glycomod/
  4. Glypeps - Accurate Mass & Peptide Modificatio
    www.dkfz-heidelberg.de/spec/glypeps/
  5. NetOGlyc
    www.cbs.dtu.dk/services/NetOGlyc/
  6. DictyOGlyc
    www.cbs.dtu.dk/services/DictyOGlyc/
  7. NetNGlyc
    www.cbs.dtu.dk/services/NetNGlyc/
  8. YinOYang
    www.cbs.dtu.dk/services/YinOYang/

Glyco related Societies

  1. EUCHIS - European Chitin Society
    www.euchis.org/


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GK Molecular and Cellular Glyco-Sciences
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