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## J

javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLColorTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractXMLObjectTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.Base64BinaryTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ColorTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTimeTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.EnumTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.HexadecimalColorTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.HexBinaryTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ListTranslator
  Creates the string representation of a simple value list from any object that implements `Iterable`.
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.QNameTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.SimpleValueTranslator
  Converts the object by invoking its `Object.toString()` method.
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.StringTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.TimeTranslator
javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator
  Converts the specified Java object to its string representation.
JPhyloIO - Class in info.bioinfweb.jphyloio
  Singleton main class that provides information about this library at runtime.
JPHYLOIO_ATTRIBUTES_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPHYLOIO_ATTRIBUTES_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPHYLOIO_DATA_TYPE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
  The namespace for data types defined in JPhyloIO.
JPHYLOIO_DATA_TYPE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
  The default namespace prefix for `ReadWriteConstants.JPHYLOIO_DATA_TYPE_NAMESPACE`.
JPHYLOIO_FORMATS_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPHYLOIO_GENERAL_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPHYLOIO_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPHYLOIO_PHYLOXML_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
JPHYLOIO_PREDICATE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPHYLOIO_PREDICATE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
JPhyloIOContentExtensionFileFilter - Class in info.bioinfweb.jphyloio.factory
JPhyloIOContentExtensionFileFilter(SingleReaderWriterFactory, ReadWriteParameterMap, String, boolean, ContentExtensionFileFilter.TestStrategy, boolean, String...) - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOContentExtensionFileFilter
JPhyloIOEvent - Interface in info.bioinfweb.jphyloio.events
  This interface is implemented by all events generated by implementations of `JPhyloIOEventReader`.
JPhyloIOEventListener - Interface in info.bioinfweb.jphyloio.push
  Interface to be implemented by classes that listen to `JPhyloIOEvent`s.
JPhyloIOEventReader - Interface in info.bioinfweb.jphyloio
  This is main JPhyloIO interface to be implemented by all format specific event readers.
JPhyloIOEventReceiver - Interface in info.bioinfweb.jphyloio.dataadapters
  Implementations of this interface are used by JPhyloIO writers to receive events from the application (generated from its business model).
JPhyloIOEventWriter - Interface in info.bioinfweb.jphyloio
  The main JPhyloIO interface to be implemented by all format specific event writers.
JPhyloIOFormatIDs - Interface in info.bioinfweb.jphyloio.formats
  Provides unique IDs for all formats that are supported by JPhyloIO.
JPhyloIOFormatInfo - Interface in info.bioinfweb.jphyloio.formatinfo
  Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
JPhyloIOFormatSpecificObject - Interface in info.bioinfweb.jphyloio
  Interface to be implemented by all format-specific classes (e.g.
JPhyloIOReaderException - Exception in info.bioinfweb.jphyloio.exception
  Exception thrown by implementations of `JPhyloIOEventReader`, if an error during reading occurs.
JPhyloIOReaderException(String, long, long, long, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderException(String, long, long, long) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderException(String, Location, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderException(String, Location) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderException(String, StreamLocationProvider, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderException(String, StreamLocationProvider) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
JPhyloIOReaderWriterFactory - Class in info.bioinfweb.jphyloio.factory
  Factory to create instances of JPhyloIO event readers and writers as well as `JPhyloIOFormatInfo` instances.
JPhyloIOReaderWriterFactory() - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory
  Returns a new instance of this class, which supports all build-in readers and writers of JPhyloIO with a buffer size as defined by `JPhyloIOReaderWriterFactory.DEFAULT_READ_AHEAD_LIMIT`.
JPhyloIOReadingUtils - Class in info.bioinfweb.jphyloio.utils
  Provides tool methods to be used by application developers when implementing a reader class that processes events from an implementations of `JPhyloIOEventReader` and stores relevant content in the application business model.
JPhyloIOReadingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOReadingUtils
JPhyloIOWriterException - Exception in info.bioinfweb.jphyloio.exception
  Exception thrown by implementations of `JPhyloIOEventWriter`, if an error during writing occurs.
JPhyloIOWriterException() - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
JPhyloIOWriterException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
JPhyloIOWriterException(String) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
JPhyloIOWriterException(Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
JPhyloIOWritingUtils - Class in info.bioinfweb.jphyloio.utils
JPhyloIOWritingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOWritingUtils
JPhyloIOXMLEventReader - Interface in info.bioinfweb.jphyloio.formats.xml
  Interface providing basic functionality for all JPhyloIO readers of XML formats.
JPhyloIOXMLEventWriter - Interface in info.bioinfweb.jphyloio.formats.xml
  Interface providing basic functionality for all JPhyloIO writers of XML formats.

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