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## B

Base64BinaryTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  An object translator between `byte[]` and xsd:base64Binary.
Base64BinaryTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.Base64BinaryTranslator
BasicEventReceiver<P extends WriterStreamDataProvider<? extends AbstractEventWriter<P>>> - Class in info.bioinfweb.jphyloio.dataadapters.implementations.receivers
  Most event receivers will be inherited from this class.
BasicEventReceiver(P, ReadWriteParameterMap) - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.receivers.BasicEventReceiver
  Creates a new instance of this class.
BasicTextCommentEventReceiver<P extends TextWriterStreamDataProvider<? extends AbstractTextEventWriter<P>>> - Class in info.bioinfweb.jphyloio.formats.text
  Basic event receiver implementation that writes comments to text formats that are delimited by a start and an end string.
BasicTextCommentEventReceiver(P, ReadWriteParameterMap, String, String) - Constructor for class info.bioinfweb.jphyloio.formats.text.BasicTextCommentEventReceiver
  Creates a new instance of this class.
beforeCommand(NexusReaderStreamDataProvider, String, NexusCommandEventReader) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.CharactersDataUnalignedBlockHandler
beforeCommand(NexusReaderStreamDataProvider, String, NexusCommandEventReader) - Method in interface info.bioinfweb.jphyloio.formats.nexus.blockhandlers.NexusBlockHandler
  This method is called before a command found in a block handled by this handler is processed, by calling the according command reader.
beforeCommand(NexusReaderStreamDataProvider, String, NexusCommandEventReader) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TaxaBlockHandler
beforeCommand(NexusReaderStreamDataProvider, String, NexusCommandEventReader) - Method in class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TreesBlockHandler
BEGIN_COMMAND - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BigDecimalTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  An object translator from and to `BigDecimal`.
BigDecimalTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.BigDecimalTranslator
BigIntegerTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  An object translator from and to `BigInteger`.
BigIntegerTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.BigIntegerTranslator
BLOCK_COMMAND_CONNECTOR - Static variable in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.NexusCommandReaderFactory
BLOCK_NAME_CHARACTERS - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BLOCK_NAME_DATA - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BLOCK_NAME_NETWORKS - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
  This block name is not part of the initial Nexus standard and used by `ENewickNetworksBlockHandler`.
BLOCK_NAME_SETS - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BLOCK_NAME_TAXA - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BLOCK_NAME_TREES - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BLOCK_NAME_UNALIGNED - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
BlockTitleToIDMap - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all
  Used internally be `NexusEventReader` and related classes to map Nexus block titles to JPhyloIO IDs.
BlockTitleToIDMap() - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.all.BlockTitleToIDMap
BooleanTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  An object translator between {link `Boolean`} and xsd:boolean.
BooleanTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.BooleanTranslator
BRANCH_LENGTH_UNITS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
BufferedEventInfo<E extends JPhyloIOEvent> - Class in info.bioinfweb.jphyloio.formats
  Used to buffer information on an event and its nested events.
BufferedEventInfo(E) - Constructor for class info.bioinfweb.jphyloio.formats.BufferedEventInfo
ByteTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  An object translator from and to `Byte`.
ByteTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.ByteTranslator

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