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## L

label - Variable in class info.bioinfweb.jphyloio.formats.nexml.elementreader.AbstractNeXMLElementReader.LabeledIDEventInformation
LABEL_CHAR_SET_ID - Static variable in interface info.bioinfweb.jphyloio.formats.mega.MEGAConstants
LabeledEvent - Class in info.bioinfweb.jphyloio.events
LabeledEvent(EventContentType, String) - Constructor for class info.bioinfweb.jphyloio.events.LabeledEvent
LabeledIDEvent - Class in info.bioinfweb.jphyloio.events
  Event that indicate data objects that carry an unique ID and a label.
LabeledIDEvent(EventContentType, String, String) - Constructor for class info.bioinfweb.jphyloio.events.LabeledIDEvent
  Creates a new instance of this class.
LabeledIDEventInformation() - Constructor for class info.bioinfweb.jphyloio.formats.nexml.elementreader.AbstractNeXMLElementReader.LabeledIDEventInformation
LabelEditingReporter - Class in info.bioinfweb.jphyloio.utils
  Data storage class that allows instances of `JPhyloIOEventWriter` to give feedback to the application on how labels of different elements (e.g.
LabelEditingReporter() - Constructor for class info.bioinfweb.jphyloio.utils.LabelEditingReporter
LabelEditingReporter.LabelStatus - Enum in info.bioinfweb.jphyloio.utils
  Enumerates the possible cases of how the label associated with a data element was treated by an instance of `JPhyloIOEventWriter`.
LENGTH_SEPERATOR - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants
lineConsumed - Variable in class info.bioinfweb.jphyloio.formats.text.AbstractTextEventReader
LinkedIDEvent - Interface in info.bioinfweb.jphyloio.events
  Interface to be implemented by event objects that can link previous events by their ID.
LinkedLabeledIDEvent - Class in info.bioinfweb.jphyloio.events
  Instances of this class model data elements with an ID and an optional label, that link another data element in a phylogenetic document.
LinkedLabeledIDEvent(EventContentType, String, String, String) - Constructor for class info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent
  Creates a new instance of this class.
LinkReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all
  Reads the `LINK` command of a Nexus block and stores the links in the shared information map of the stream data provider under the key `NexusReaderStreamDataProvider.INFO_KEY_BLOCK_LINKS`.
LinkReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.all.LinkReader
ListBasedDocumentDataAdapter - Class in info.bioinfweb.jphyloio.dataadapters.implementations
  Default implementation of `DocumentDataAdapter`.
ListBasedDocumentDataAdapter(ListOrderedMap<String, OTUListDataAdapter>, List<MatrixDataAdapter>, List<TreeNetworkGroupDataAdapter>) - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.ListBasedDocumentDataAdapter
  Creates a new instance of this class using the specified lists.
ListBasedDocumentDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.ListBasedDocumentDataAdapter
  Creates a new instance of this class with empty array lists for all properties.
listToString(Iterable<?>) - Static method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ListTranslator
ListTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  Reads and writes string representations of simple values as used in Newick or Nexus.
ListTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.ListTranslator
LiteralContentSequenceType - Enum in info.bioinfweb.jphyloio.events.meta
  Enumerates the types of sequences of `LiteralMetadataContentEvent`s that can be nested inside an `LiteralMetadataEvent`.
LiteralMetadataContentEvent - Class in info.bioinfweb.jphyloio.events.meta
  This event represents a value of a literal metadata and is therefore always nested inside start and end events of the type `EventContentType.LITERAL_META`.
LiteralMetadataContentEvent(String, boolean) - Constructor for class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
  Creates a new instance of this class.
LiteralMetadataContentEvent(Object, String) - Constructor for class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
  Creates a new instance of this class.
LiteralMetadataContentEvent(XMLEvent, boolean) - Constructor for class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
  Creates a new instance of this class wrapping an `XMLEvent`.
LiteralMetadataEvent - Class in info.bioinfweb.jphyloio.events.meta
  Indicates that literal metadata is modeled at the current position of the document (event stream).
LiteralMetadataEvent(String, String, URIOrStringIdentifier, LiteralContentSequenceType) - Constructor for class info.bioinfweb.jphyloio.events.meta.LiteralMetadataEvent
LiteralMetadataEvent(String, String, URIOrStringIdentifier, URIOrStringIdentifier, LiteralContentSequenceType) - Constructor for class info.bioinfweb.jphyloio.events.meta.LiteralMetadataEvent
LiteralMetadataEvent(String, String, URIOrStringIdentifier, String, URIOrStringIdentifier, LiteralContentSequenceType) - Constructor for class info.bioinfweb.jphyloio.events.meta.LiteralMetadataEvent
logIngnoredOTULists(DocumentDataAdapter, ApplicationLogger, ReadWriteParameterMap, String, String) - Static method in class info.bioinfweb.jphyloio.AbstractEventWriter
  Outputs a warning message, if the specified document data adapter provides one or more OTU lists.
LongTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
  An object translator from and to `Long`.
LongTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.LongTranslator

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