## Uses of Class
info.bioinfweb.jphyloio.AbstractEventReader

- Packages that use AbstractEventReader
  Package | Description
  --- | ---
  info.bioinfweb.jphyloio | The main package of JPhyloIO.
  info.bioinfweb.jphyloio.formats.fasta | Contains classes for reading from and writing to streams/files in FASTA format.
  info.bioinfweb.jphyloio.formats.mega | Contains classes for reading from and writing to streams/files in MEGA format.
  info.bioinfweb.jphyloio.formats.newick | Contains classes for reading from and writing to streams/files in Newick tree format.
  info.bioinfweb.jphyloio.formats.nexml | Contains classes for reading from and writing to streams/files in NeXML format.
  info.bioinfweb.jphyloio.formats.nexus | Contains classes for reading from and writing to streams/files in Nexus format.
  info.bioinfweb.jphyloio.formats.pde | Contains classes for reading from streams/files in PDE format.
  info.bioinfweb.jphyloio.formats.phylip | Contains classes for reading from and writing to streams/files in Phylip format.
  info.bioinfweb.jphyloio.formats.phyloxml | Contains classes for reading from and writing to streams/files in PhyloXML format.
  info.bioinfweb.jphyloio.formats.text | Contains classes implementing shared functionality for reading from and writing to streams/files in text formats.
  info.bioinfweb.jphyloio.formats.xml | Contains classes implementing shared functionality for reading from and writing to streams/files in XML formats.
  info.bioinfweb.jphyloio.formats.xtg | Contains classes for reading from and writing to streams/files in XTG format.

- - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio

    Classes in info.bioinfweb.jphyloio with type parameters of type AbstractEventReader
    Modifier and Type | Class and Description
    --- | ---
    `class` | `AbstractEventReader<P extends ReaderStreamDataProvider<? extends AbstractEventReader<P>>>` Basic implementation for event readers in PhyloIO.
    `class` | `ReaderStreamDataProvider<R extends AbstractEventReader<? extends ReaderStreamDataProvider<R>>>` Stream data providers are objects used by helper classes of JPhyloIO event readers (e.g.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.fasta

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.fasta
    Modifier and Type | Class and Description
    --- | ---
    `class` | `FASTAEventReader` Event based reader for FASTA alignment files.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.mega

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.mega
    Modifier and Type | Class and Description
    --- | ---
    `class` | `MEGAEventReader` Event based reader for MEGA alignment files.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.newick

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.newick
    Modifier and Type | Class and Description
    --- | ---
    `class` | `NewickEventReader` Reads tree files in Newick format.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.nexml

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.nexml
    Modifier and Type | Class and Description
    --- | ---
    `class` | `NeXMLEventReader` An event reader for the NeXML format.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.nexus

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.nexus
    Modifier and Type | Class and Description
    --- | ---
    `class` | `NexusEventReader` Event based reader for Nexus files.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.pde

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.pde
    Modifier and Type | Class and Description
    --- | ---
    `class` | `PDEEventReader` Event reader for the PDE format used by the alignment editor PhyDE.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.phylip

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.phylip
    Modifier and Type | Class and Description
    --- | ---
    `class` | `AbstractPhylipEventReader<P extends TextReaderStreamDataProvider<? extends AbstractPhylipEventReader<P>>>` Implements shared functionality of Phylip event readers.
    `class` | `PhylipEventReader` Event based reader for Phylip alignment files.
    `class` | `SequentialPhylipEventReader` Event based reader for sequential Phylip alignment files.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.phyloxml

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.phyloxml
    Modifier and Type | Class and Description
    --- | ---
    `class` | `PhyloXMLEventReader` Event reader for the PhyloXML format.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.text

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.text
    Modifier and Type | Class and Description
    --- | ---
    `class` | `AbstractTextEventReader<P extends TextReaderStreamDataProvider<? extends AbstractTextEventReader<P>>>` Abstract base class for all readers that read their data from a file using a `PeekReader`.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.xml

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.xml
    Modifier and Type | Class and Description
    --- | ---
    `class` | `AbstractXMLEventReader<P extends XMLReaderStreamDataProvider<? extends AbstractXMLEventReader<P>>>` Implements shared functionality for reading XML formats.

  - ### Uses of AbstractEventReader in info.bioinfweb.jphyloio.formats.xtg

    Subclasses of AbstractEventReader in info.bioinfweb.jphyloio.formats.xtg
    Modifier and Type | Class and Description
    --- | ---
    `class` | `XTGEventReader` Event reader for the extensible TreeGraph 2 format (XTG) used by the phylogenetic tree editor TreeGraph 2.