Write HTML report

Description

Create a HTML report for peptide-spectral matching results.

Input files

• exactly 1 PSM list file (.csv)

Output files

• HTML report (omssa-report.html)

Context

Parameters

Write identified proteins by spectral count

Default: true

Write identified proteins by spot

Default: true

Write identified proteins by distinct peptide count

Default: true

Write additional peptides identified by GPF

Default: true

Write ambiguous peptides

Default: true

Write all identified peptides

Default: true

Write modified peptides

Default: true

Tweaks

Putative entry prefix

Default: putative

Source code

write-omssa-report.rb, write-omssa-report.yaml (GitHub)