Strip mzML files

Description

Strip certain scan from a mzML file, based on MS levels or scan IDs. Scan IDs can be specified as a parameter or via text files or PSM list files.

Input files

• at least 1 mzML file (.mzml | .mzml.bz2 | .mzml.gz | .mzml.zip)
• optional: PSM list files (.csv)
• optional: Scan IDs files (.txt)

Output files

This is a converter script which produces a stripped mzML files file for every input mzML file.

Context

No context information available.

Parameters

Strip MS levels

Specify which levels to strip, leave blank if you don’t want this.

Examples: 1, 1,2

Scan ID action

Choose whether scans specified in text and PSM list files should be kept or stripped.

Choices: strip (default), keep

Compress result file

Choices: no compression, gzip (default), bzip2

Source code

strip-mzml.rb, strip-mzml.yaml (GitHub)