Create six frame translation

Description

This script creates a six frame translation from a set of genomic FASTA databases.

Input files

• at least 1 database file (.fa | .faa | .fas | .fasta)

Output files

• Six frame translation (sixframes.fasta)

Context

Parameters

Frames

Specify which frames should be translated.

Choices: 1, 2, 3, 4, 5, 6

Format

Specify the ID line format, where %1 is basename, %2 is scaffold and %3 is the frame number

Default: ORF_%1_%2_frame%3

Source code

sixframes.rb, sixframes.yaml (GitHub)