Patchy peptides

Description

This script stitches de novo predictions together, thus creating patchy peptides.

Input files

• at least 1 PEAKS de novo peptide file (.fa | .faa | .fas | .fasta)

Output files

• CSV results (patchy-peptides.csv)
• FASTA results (patchy-peptides.fasta)

Context

Parameters

Minimum overlap

Default: 3

Minimum PEAKS score

Default: 10.0 %

Source code

patchy-peptides.rb, patchy-peptides.yaml (GitHub)