Determine GFF feature lengths

Determine GFF feature lengths

Description

Create a histogram of feature lengths in a GFF file.

Input files

  • at least 1 GFF file (.gff)

Output files

  • Histogram (histogram.csv)

Context

No context information available.

Parameters

Property
Choose which property to extract from the GFF file. If left empty, all properties will be extracted.

Examples: intron, exon, gene, mRNA, CDS

Bin size

Default: 10.0

Use logarithmic bins

Default: false

Split different sources
Create a histogram for all individual sequence sources as described by the first GFF field

Default: false

Source code

gff-length-histogram.rb, gff-length-histogram.yaml (GitHub)