Normalize protein levels

Normalize protein levels

Description

This script multiplies all heavy amounts in a QE list with a user-defined factor to accomodate for protein loading differences.
Example: If you observe a ratio of 0.85 for a protein which should be 1.0, simply enter 0.85 into the ‘Normalization factor’ field. This will change all amounts in such a way that the protein’s ratio will increase from 0.85 to 1.0, and all other ratios will increase accordingly.

Input files

  • at least 1 quantitation events file (.csv)

Output files

  • Normalized results (normalized.csv)

Context



Parameters

Normalization factor

Default: 1.0

Source code

filter-qe-normalize.rb, filter-qe-normalize.yaml (GitHub)