Convert PSM lists to AMS

Description

Convert a PSM list to the AMS file format for use with 2DB.

Input files

• at least 1 OMSSA results file (.csv)
• optional: spectra files (.mzdata | .mzdata.bz2 | .mzdata.gz | .mzdata.zip | .mzml | .mzml.bz2 | .mzml.gz | .mzml.zip | .mzxml | .mzxml.bz2 | .mzxml.gz | .mzxml.zip | .xml | .xml.bz2 | .xml.gz | .xml.zip)

Output files

This is a converter script which produces a AMS file file for every input OMSSA results file.

Context

No context information available.

Source code

export-psm-to-ams.rb, export-psm-to-ams.yaml (GitHub)