Convert OMSSA CSV to mzIdentML

Description

Convert OMSSA CSV output files to the mzIdentML file format. Attention: Only peptide identifications are reported in the output file, details about the database search (mass tolerances, enzyme, …) are not saved.

Input files

• at least 1 OMSSA PSM file (.csv)

Output files

This is a converter script which produces a mzIdentML files file for every input OMSSA PSM file.

Context

Source code

csv-to-mzidentml.rb, csv-to-mzidentml.yaml (GitHub)