Compare OMSSA PSM lists

Description

Compare cropped OMSSA peptide-spectral matches.

Input files

• at least 1 PSM list file (.csv)

Output files

• HTML report (compare-omssa-report.html)
• CSV report (compare-omssa-report.csv)

Context

Parameters

List safe proteins only

Safe proteins have been identified by at least two distinct peptides or by at least one GPF peptide

Default: false

Add peptides to HTML report

Default: false

Add peptides to CSV report

If this flag is checked, the distinct peptide columns will be omitted.

Default: false

Source code

compare-omssa.rb, compare-omssa.yaml (GitHub)