Chop FASTA databases

Description

Chop FASTA databases into chunks.

Input files

• optional: FASTA database files (.fa | .faa | .fas | .fasta)

Output files

This is a converter script which produces a chopped database file for every input FASTA database file.

Context

Parameters

Chunk size

Default: 400

Chunk overlap

Default: 50.0 %

Source code

chop-fasta.rb, chop-fasta.yaml (GitHub)