Analyze PSM

Description

Analyze peptide-spectral matches.

Input files

• at least 1 OMSSA results file (.csv)

Output files

• PSM analysis (psm-analysis.xhtml)

Context

Parameters

FPR calculation

Choices: 2 * decoys / (decoys + targets)) (default), decoys / targets

Tweaks

Target entry prefix

This will be prepended to every target entry during target/decoy generation.

Default: __td__target_

Decoy entry prefix

This will be prepended to every decoy entry during target/decoy generation.

Default: __td__decoy_

Amount of decoys per target

Specify how many decoys have been generated for every target.

Default: 1

Source code

analyze-psm.rb, analyze-psm.yaml (GitHub)